Mercurial > repos > iuc > exonerate
annotate test-data/est2genome.gff @ 0:f48ed38dfddf draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
author | iuc |
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date | Thu, 02 Aug 2018 09:11:30 -0400 |
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children | a03dead1bede |
rev | line source |
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0
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
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1 # --- START OF GFF DUMP --- |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
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2 # |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
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3 # |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
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4 ##gff-version 2 |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
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5 ##source-version exonerate:est2genome 2.4.0 |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
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6 ##date 2018-08-02 |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
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7 ##type DNA |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
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8 # |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
9 # |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
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10 # seqname source feature start end score strand frame attributes |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
11 # |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
12 sample exonerate:est2genome gene 2742 2819 102 - . gene_id 1 ; sequence sample ; gene_orientation . ; identity 58.97 ; similarity 58.97 |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
13 sample exonerate:est2genome exon 2742 2819 . - . insertions 0 ; deletions 0 ; identity 58.97 ; similarity 58.97 |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
14 sample exonerate:est2genome similarity 2742 2819 102 - . alignment_id 1 ; Query sample ; Align 2820 1168 78 |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
15 # --- END OF GFF DUMP --- |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
16 # |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
17 # --- START OF GFF DUMP --- |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
18 # |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
19 # |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
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20 ##gff-version 2 |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
21 ##source-version exonerate:est2genome 2.4.0 |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
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22 ##date 2018-08-02 |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
23 ##type DNA |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
24 # |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
25 # |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
26 # seqname source feature start end score strand frame attributes |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
27 # |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
28 sample exonerate:est2genome gene 758 3050 7309 + . gene_id 1 ; sequence sample ; gene_orientation + ; identity 99.93 ; similarity 99.93 |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
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29 sample exonerate:est2genome utr5 758 1332 . + . |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
30 sample exonerate:est2genome exon 758 1332 . + . insertions 0 ; deletions 2 ; identity 99.83 ; similarity 99.83 |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
31 sample exonerate:est2genome splice5 1333 1334 . + . intron_id 1 ; splice_site "TT" |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
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32 sample exonerate:est2genome intron 1333 2151 . + . intron_id 1 |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
33 sample exonerate:est2genome splice3 2150 2151 . + . intron_id 0 ; splice_site "AT" |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
34 sample exonerate:est2genome exon 2152 3050 . + . insertions 0 ; deletions 0 ; identity 100.00 ; similarity 100.00 |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
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35 sample exonerate:est2genome similarity 758 3050 7309 + . alignment_id 1 ; Query sample ; Align 758 1 572 ; Align 1330 575 3 ; Align 2152 578 899 |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
|
36 # --- END OF GFF DUMP --- |
f48ed38dfddf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff
changeset
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37 # |