Mercurial > repos > iuc > exonerate

annotate test-data/protein2genome.gff @ 3:a03dead1bede draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit a141c63903d1a598569985e400125d4e7de42801"
author iuc
date Sun, 01 Mar 2020 04:48:34 -0500
parents f48ed38dfddf
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
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1 # --- START OF GFF DUMP ---
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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2 #
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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3 #
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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4 ##gff-version 2
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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5 ##source-version exonerate:protein2genome:local 2.4.0
3
a03dead1bede "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit a141c63903d1a598569985e400125d4e7de42801"
iuc
parents: 0
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6 ##date 2020-02-26
0
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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7 ##type DNA
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
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8 #
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
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9 #
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
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10 # seqname source feature start end score strand frame attributes
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
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11 #
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
diff changeset
12 sample exonerate:protein2genome:local gene 1181 2291 456 + . gene_id 1 ; sequence sample ; gene_orientation + ; identity 98.97 ; similarity 100.00
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
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13 sample exonerate:protein2genome:local cds 1181 1326 . + .
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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14 sample exonerate:protein2genome:local exon 1181 1326 . + . insertions 0 ; deletions 0 ; identity 100.00 ; similarity 100.00
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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15 sample exonerate:protein2genome:local splice5 1327 1328 . + . intron_id 1 ; splice_site "CA"
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
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16 sample exonerate:protein2genome:local intron 1327 2143 . + . intron_id 1
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
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17 sample exonerate:protein2genome:local splice3 2142 2143 . + . intron_id 0 ; splice_site "AT"
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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18 sample exonerate:protein2genome:local cds 2144 2291 . + .
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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19 sample exonerate:protein2genome:local exon 2144 2291 . + . insertions 0 ; deletions 0 ; identity 97.96 ; similarity 100.00
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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20 sample exonerate:protein2genome:local similarity 1181 2291 456 + . alignment_id 1 ; Query sample ; Align 1181 1 144 ; Align 2145 50 147
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
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21 # --- END OF GFF DUMP ---
f48ed38dfddf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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22 #