Mercurial > repos > iuc > exonerate
comparison exonerate.xml @ 2:b03ae2ba8688 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit ce91cc3863ddfb33fd8415b3239c6b3284ed591f
| author | iuc |
|---|---|
| date | Fri, 28 Jun 2019 11:21:08 -0400 |
| parents | 2485637fe656 |
| children | a03dead1bede |
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| 1:2485637fe656 | 2:b03ae2ba8688 |
|---|---|
| 1 <tool id="exonerate" name="Exonerate" profile="16.04" version="@VERSION@"> | 1 <tool id="exonerate" name="Exonerate" profile="16.04" version="@VERSION@+galaxy1"> |
| 2 <description>pairwise sequence comparison</description> | 2 <description>pairwise sequence comparison</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
| 37 #elif str($outformat) == "targetgff" | 37 #elif str($outformat) == "targetgff" |
| 38 --showalignment no --showvulgar no --showtargetgff yes --showquerygff no > '${output_gff}' | 38 --showalignment no --showvulgar no --showtargetgff yes --showquerygff no > '${output_gff}' |
| 39 #elif str($outformat) == "querygff" | 39 #elif str($outformat) == "querygff" |
| 40 --showalignment no --showvulgar no --showtargetgff no --showquerygff yes > '${output_gff}' | 40 --showalignment no --showvulgar no --showtargetgff no --showquerygff yes > '${output_gff}' |
| 41 #end if | 41 #end if |
| 42 | |
| 43 --cores \${GALAXY_SLOTS:-1} | |
| 42 ]]></command> | 44 ]]></command> |
| 43 | 45 |
| 44 <inputs> | 46 <inputs> |
| 45 <param argument="--query" type="data" format="fasta" label="Select the query sequence(s) in fasta" /> | 47 <param argument="--query" type="data" format="fasta" label="Select the query sequence(s) in fasta" /> |
| 46 | 48 |