Mercurial > repos > iuc > exonerate
diff test-data/est2genome.gff @ 0:f48ed38dfddf draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
author | iuc |
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date | Thu, 02 Aug 2018 09:11:30 -0400 |
parents | |
children | a03dead1bede |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/est2genome.gff Thu Aug 02 09:11:30 2018 -0400 @@ -0,0 +1,37 @@ +# --- START OF GFF DUMP --- +# +# +##gff-version 2 +##source-version exonerate:est2genome 2.4.0 +##date 2018-08-02 +##type DNA +# +# +# seqname source feature start end score strand frame attributes +# +sample exonerate:est2genome gene 2742 2819 102 - . gene_id 1 ; sequence sample ; gene_orientation . ; identity 58.97 ; similarity 58.97 +sample exonerate:est2genome exon 2742 2819 . - . insertions 0 ; deletions 0 ; identity 58.97 ; similarity 58.97 +sample exonerate:est2genome similarity 2742 2819 102 - . alignment_id 1 ; Query sample ; Align 2820 1168 78 +# --- END OF GFF DUMP --- +# +# --- START OF GFF DUMP --- +# +# +##gff-version 2 +##source-version exonerate:est2genome 2.4.0 +##date 2018-08-02 +##type DNA +# +# +# seqname source feature start end score strand frame attributes +# +sample exonerate:est2genome gene 758 3050 7309 + . gene_id 1 ; sequence sample ; gene_orientation + ; identity 99.93 ; similarity 99.93 +sample exonerate:est2genome utr5 758 1332 . + . +sample exonerate:est2genome exon 758 1332 . + . insertions 0 ; deletions 2 ; identity 99.83 ; similarity 99.83 +sample exonerate:est2genome splice5 1333 1334 . + . intron_id 1 ; splice_site "TT" +sample exonerate:est2genome intron 1333 2151 . + . intron_id 1 +sample exonerate:est2genome splice3 2150 2151 . + . intron_id 0 ; splice_site "AT" +sample exonerate:est2genome exon 2152 3050 . + . insertions 0 ; deletions 0 ; identity 100.00 ; similarity 100.00 +sample exonerate:est2genome similarity 758 3050 7309 + . alignment_id 1 ; Query sample ; Align 758 1 572 ; Align 1330 575 3 ; Align 2152 578 899 +# --- END OF GFF DUMP --- +#