# HG changeset patch
# User iuc
# Date 1539784183 14400
# Node ID 2485637fe6563218c46bd3a5783e5f12e4f5ce22
# Parent  f48ed38dfddf4cfc57c016deb9f24cfb44f6f2c3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit 9655295f3e3f9831fe1e04c1bc7f9b5db1046ec5

diff -r f48ed38dfddf -r 2485637fe656 exonerate.xml
--- a/exonerate.xml	Thu Aug 02 09:11:30 2018 -0400
+++ b/exonerate.xml	Wed Oct 17 09:49:43 2018 -0400
@@ -83,10 +83,10 @@
         <param name='bestn' type='integer' min="0" max="10000" value="0" label="Report best N results per query (0 to report all)"/>
     </inputs>
     <outputs>
-        <data name="output_gff" format="txt" label="${tool.name} on $on_string">
+        <data name="output_gff" format="gff" label="${tool.name} on $on_string">
             <filter>outformat != 'alignment'</filter>
         </data>
-        <data name="output_ali" format="gff" label="${tool.name} on $on_string">
+        <data name="output_ali" format="txt" label="${tool.name} on $on_string">
             <filter>outformat == 'alignment'</filter>
         </data>
     </outputs>
@@ -98,7 +98,7 @@
                 <param name="input_fasta" value="genome.fa"/>
             </conditional>
             <param name="outformat" value="targetgff"/>
-            <output name="output_gff" file="out_target.gff"/>
+            <output name="output_gff" file="out_target.gff" lines_diff="8"/>
         </test>
         <test>
             <param name="query" value="genome.fa"/>
@@ -107,7 +107,7 @@
                 <param name="input_fasta" value="merlin"/>
             </conditional>
             <param name="outformat" value="targetgff"/>
-            <output name="output_gff" file="out_target.gff"/>
+            <output name="output_gff" file="out_target.gff" lines_diff="8"/>
         </test>
         <test>
             <param name="query" value="genome.fa"/>
@@ -116,7 +116,7 @@
                 <param name="input_fasta" value="genome.fa"/>
             </conditional>
             <param name="outformat" value="querygff"/>
-            <output name="output_gff" file="out_query.gff"/>
+            <output name="output_gff" file="out_query.gff" lines_diff="8"/>
         </test>
         <test>
             <param name="query" value="genome.fa"/>
@@ -135,7 +135,7 @@
             </conditional>
             <param name="model" value="est2genome"/>
             <param name="outformat" value="targetgff"/>
-            <output name="output_gff" file="est2genome.gff"/>
+            <output name="output_gff" file="est2genome.gff" lines_diff="4"/>
         </test>
         <test>
             <param name="query" value="proteome.fa"/>
@@ -145,7 +145,7 @@
             </conditional>
             <param name="model" value="protein2genome"/>
             <param name="outformat" value="targetgff"/>
-            <output name="output_gff" file="protein2genome.gff"/>
+            <output name="output_gff" file="protein2genome.gff" lines_diff="2"/>
         </test>
         <test>
             <param name="query" value="genome.fa"/>
@@ -155,7 +155,7 @@
             </conditional>
             <param name="model" value="coding2coding"/>
             <param name="outformat" value="targetgff"/>
-            <output name="output_gff" file="coding2coding.gff"/>
+            <output name="output_gff" file="coding2coding.gff" lines_diff="4"/>
         </test>
     </tests>
     <help><![CDATA[