comparison extract_genomic_dna.xml @ 10:5cc8e93ee98f draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/extract_genomic_dna commit a656cf7893ea9ce63d0e470c027fc185b5b6d82d"

9:e1f5bdd8279c

<tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="3.0.3">
    <description>using coordinates from assembled/unassembled genomes</description>
    <requirements>
        <requirement type="package" version="0.7.1">bx-python</requirement>
        <requirement type="package" version="1.10.0">six</requirement>
        <requirement type="package" version="324">ucsc-fatotwobit</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
#set genome = $input.metadata.dbkey
#set datatype = $input.datatype
mkdir -p output_dir &&

                <option value="history">from history</option>
            </param>
            <when value="cached">
                <param name="reference_genome" type="select" label="Using reference genome">
                    <options from_data_table="twobit">
                        <filter type="data_meta" key="dbkey" ref="input" column="dbkey"/>
                    </options>
                    <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/>
                </param>
            </when>
            <when value="history">

10:5cc8e93ee98f

<tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="3.0.3+galaxy2">
    <description>using coordinates from assembled/unassembled genomes</description>
    <requirements>
        <requirement type="package" version="0.7.1">bx-python</requirement>
        <requirement type="package" version="1.13.0">six</requirement>
        <requirement type="package" version="377">ucsc-fatotwobit</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
#set genome = $input.metadata.dbkey
#set datatype = $input.datatype
mkdir -p output_dir &&

                <option value="history">from history</option>
            </param>
            <when value="cached">
                <param name="reference_genome" type="select" label="Using reference genome">
                    <options from_data_table="twobit">
                        <filter type="data_meta" key="dbkey" ref="input" column="value"/>
                    </options>
                    <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/>
                </param>
            </when>
            <when value="history">