Mercurial > repos > iuc > extract_genomic_dna
comparison extract_genomic_dna.py @ 5:c8467246b57e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/extract_genomic_dna commit 19ea4feff5ccf3744c549b9a67259947a1cb90ba
author | iuc |
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date | Sat, 21 Jan 2017 14:41:27 -0500 |
parents | b71579ad576c |
children | 3088e7e70888 |
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4:4822a36300fd | 5:c8467246b57e |
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4 | 4 |
5 import bx.seq.nib | 5 import bx.seq.nib |
6 import bx.seq.twobit | 6 import bx.seq.twobit |
7 from bx.intervals.io import Comment, Header | 7 from bx.intervals.io import Comment, Header |
8 | 8 |
9 import extract_genomic_dna_utils as egdu | 9 import extract_genomic_dna_utils as egdu # noqa: I100 |
10 | 10 |
11 parser = argparse.ArgumentParser() | 11 parser = argparse.ArgumentParser() |
12 parser.add_argument('--input_format', dest='input_format', help="Input dataset format") | 12 parser.add_argument('--input_format', dest='input_format', help="Input dataset format") |
13 parser.add_argument('--input', dest='input', help="Input dataset") | 13 parser.add_argument('--input', dest='input', help="Input dataset") |
14 parser.add_argument('--genome', dest='genome', help="Input dataset genome build") | 14 parser.add_argument('--genome', dest='genome', help="Input dataset genome build") |