Mercurial > repos > iuc > extract_genomic_dna

comparison extract_genomic_dna.py @ 8:e400dcbc60d0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/extract_genomic_dna commit cb490a0eee9efc2cd6c98d5bb714b75b5894c56c
author iuc
date Mon, 06 Nov 2017 23:20:04 -0500
parents 3088e7e70888
children
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7:3088e7e70888 8:e400dcbc60d0
6 6
7 import bx.seq.nib 7 import bx.seq.nib
8 import bx.seq.twobit 8 import bx.seq.twobit
9 from bx.intervals.io import Comment, Header 9 from bx.intervals.io import Comment, Header
10 10
11 import extract_genomic_dna_utils as egdu # noqa: I100 11 import extract_genomic_dna_utils as egdu # noqa: I100,I202
12 12
13 parser = argparse.ArgumentParser() 13 parser = argparse.ArgumentParser()
14 parser.add_argument('--input_format', dest='input_format', help="Input dataset format") 14 parser.add_argument('--input_format', dest='input_format', help="Input dataset format")
15 parser.add_argument('--input', dest='input', help="Input dataset") 15 parser.add_argument('--input', dest='input', help="Input dataset")
16 parser.add_argument('--genome', dest='genome', help="Input dataset genome build") 16 parser.add_argument('--genome', dest='genome', help="Input dataset genome build")