Mercurial > repos > iuc > extract_genomic_dna

diff extract_genomic_dna_utils.py @ 3:b71579ad576c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/extract_genomic_dna commit bd4fbe120288bf8452e479cbd82aa1bbf5c4bd31
author iuc
date Mon, 19 Dec 2016 11:57:37 -0500
parents 702970e4a134
children 3088e7e70888
line wrap: on
line diff
--- a/extract_genomic_dna_utils.py	Wed Mar 09 05:07:21 2016 -0500
+++ b/extract_genomic_dna_utils.py	Mon Dec 19 11:57:37 2016 -0500
@@ -4,7 +4,7 @@
 import sys
 import tempfile
 
-from bx.intervals.io import Comment, Header, GenomicInterval
+from bx.intervals.io import Comment, GenomicInterval, Header
 from bx.intervals.io import GenomicIntervalReader, NiceReaderWrapper, ParseError
 
 # Default chrom, start, end, strand cols for a bed file
@@ -288,7 +288,7 @@
             os.remove(tmp_name)
             stop_err(stderr)
         return seq_path
-    except Exception, e:
+    except Exception as e:
         stop_err('Error running faToTwoBit. ' + str(e))