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comparison test-data/fastqc_report_kmer.html @ 0:e462044ece67 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
author iuc
date Tue, 04 Jun 2024 14:14:49 +0000
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1 <html><head> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <title> 1000trimmed_fastq - report </title><link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/css/bootstrap.min.css" integrity="sha384-ggOyR0iXCbMQv3Xipma34MD+dH/1fQ784/j6cY/iJTQUOhcWr7x9JvoRxT2MZw1T" crossorigin="anonymous"><link href="https://stackpath.bootstrapcdn.com/font-awesome/4.7.0/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-wvfXpqpZZVQGK6TAh5PVlGOfQNHSoD2xbE+QkPxCAFlNEevoEH3Sl0sibVcOQVnN" crossorigin="anonymous"><style type="text/css"> @media screen { div.summary { width: 18em; position:fixed; top: 4em; margin:1em 0 0 1em; } div.main { display:block; position:absolute; overflow:auto; height:auto; width:auto; top:4.5em; bottom:2.3em; left:18em; right:0; border-left: 1px solid #CCC; padding:0 0 0 1em; background-color: white; z-index:1; } div.header { background-color: #EEE; border:0; margin:0; padding: 0.2em; font-size: 200%; position:fixed; width:100%; top:0; left:0; z-index:2; } div.footer { background-color: #EEE; border:0; margin:0; padding:0.5em; height: 2.5em; overflow:hidden; font-size: 100%; position:fixed; bottom:0; width:100%; z-index:2; } img.indented { margin-left: 3em; } } @media print { img { max-width:100% !important; page-break-inside: avoid; } h2, h3 { page-break-after: avoid; } div.header { background-color: #FFF; } } body { color: #000; background-color: #FFF; border: 0; margin: 0; padding: 0; } div.header { border:0; margin:0; padding: 0.5em; font-size: 200%; width:100%; } #header_title { display:inline-block; float:left; clear:left; } #header_filename { display:inline-block; float:right; clear:right; font-size: 50%; margin-right:2em; text-align: right; } div.header h3 { font-size: 50%; margin-bottom: 0; } div.summary ul { padding-left:0; list-style-type:none; } div.summary ul li img { margin-bottom:-0.5em; margin-top:0.5em; } div.main { background-color: white; } div.module { padding-bottom:3em; padding-top:3em; border-bottom: 1px solid #990000 } div.footer { background-color: #EEE; border:0; margin:0; padding: 0.5em; font-size: 100%; width:100%; } h2 { color: #2a5e8c; padding-bottom: 0; margin-bottom: 0; clear:left; }table { margin-left: 3em; text-align: center; } th { text-align: center; background-color: #000080; color: #FFF; padding: 0.4em;} td { font-family: monospace; text-align: left; background-color: #EEE; color: #000; padding: 0.4em;}img { padding-top: 0; margin-top: 0; border-top: 0;} p { padding-top: 0; margin-top: 0;}.pass { color : #009900;}.warn { color : #999900;}.fail { color : #990000;}</style><script src="https://cdn.plot.ly/plotly-latest.min.js"></script></head><body><div class="header"> <div id="header_title">Report</div> <div id="header_filename">Mon May 27 16:59:30 2024
2 <br/> 1000trimmed_fastq </div></div><div class="summary"><h2>Summary</h2><ul> <li><a class="pass" href="#basicstatistics"> Basic Statistics </a></li> <li><a class="pass" href="#perbasesequencequality"> Per base sequence quality</a></li> <li><a class="fail" href="#pertilesequencequality">Per tile sequence quality</a></li> <li><a class="pass" href="#persequencequalityscores">Per sequence quality scores</a></li> <li><a class="fail" href="#perbasesequencecontent">Per base sequence content</a></li> <li><a class="warn" href="#persequencegccontent">Per sequence GC content</a></li> <li><a class="pass" href="#perbasencontent">Per base N content</a></li> <li><a class="warn" href="#sequencelengthdistribution">Sequence Length Distribution</a></li> <li><a class="pass" href="#sequenceduplicationlevels">Sequence Duplication Levels</a></li> <li><a class="warn" href="#overrepresentedsequences">Overrepresented sequences</a></li> <li><a class="pass" href="#adaptercontent">Adapter Content</a></li> <!-- <li><a class="{{passkmercontent}}" href="#kmercontent">{{kmercontentname}}</a></li> --></ul></div><div class="main"><div class="module"> <h2 class="pass" id="basicstatistics"> Basic Statistics: pass </h2> <table><thead><tr><th>Measure</th><th>Value</th></tr></thead><tbody><tr><td>Filename</td><td>1000trimmed_fastq</td></tr><tr><td>File type</td><td>Conventional base calls</td></tr><tr><td>Encoding</td><td>Sanger / Illumina 1.9</td></tr><tr><td>Total Sequences</td><td>4905</td></tr><tr><td>Sequences Flagged As Poor Quality</td><td>0</td></tr><tr><td>Sequence length</td><td>1 - 108</td></tr><tr><td>%GC:</td><td>41</td></tr></tbody></table></div><div class="module"> <h2 class="pass" id="perbasesequencequality"> Per base sequence quality: pass</h2> <div id="seqbasequalityboxplot"></div></div><div class="module"> <h2 class="fail" id="pertilesequencequality"> Per tile sequence quality : fail </h2> <div id="tilequalityheatmap"></div></div><div class="module"> <h2 class="pass" id="persequencequalityscores"> Per sequence quality scores : pass </h2> <div id="seqqualitylineplot"></div></div><div class="module"> <h2 class="fail" id="perbasesequencecontent"> Per base sequence content : fail </h2> <div id="basesequencecontentlineplot"></div></div><div class="module"> <h2 class="warn" id="persequencegccontent"> Per sequence GC content: warn </h2> <div id="sequencegccontentlineplot"></div></div><div class="module"> <h2 class="pass" id="perbasencontent"> Per base N content : pass </h2> <div id="basencontentlineplot"></div></div><div class="module"> <h2 class="warn" id="sequencelengthdistribution"> Sequence Length Distribution : warn </h2> <div id="sequencelengthdistributionlineplot"></div></div><div class="module"> <h2 class="pass" id="sequenceduplicationlevels"> Sequence Duplication Levels : pass </h2> <div id="seqduplevelslineplot"></div></div><div class="module"> <h2 class="warn" id="overrepresentedsequences"> Overrepresented sequences : warn</h2> <table><thead><tr><th>Sequence</th><th>Count</th><th>Percentage</th><th>Possible Source</th></tr></thead><tbody><tr><td>ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCAT</td><td>33</td><td>0.672783</td><td>No Hit</td></tr></tbody></table></div><div class="module"> <h2 class="pass" id="adaptercontent"> Adapter Content : pass </h2> <div id="adapterlineplot"></div></div><!--<div class="module"> <h2 class="{{passkmercontent}}" id="kmercontent"> {{kmercontentname}} : {{passkmercontent}} </h2> <div id="kmerlineplot"></div></div>--></div><div class="footer">Falco 1.2.2</div></body><script src="https://code.jquery.com/jquery-3.3.1.slim.min.js" integrity="sha384-q8i/X+965DzO0rT7abK41JStQIAqVgRVzpbzo5smXKp4YfRvH+8abtTE1Pi6jizo" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.14.7/umd/popper.min.js" integrity="sha384-UO2eT0CpHqdSJQ6hJty5KVphtPhzWj9WO1clHTMGa3JDZwrnQq4sF86dIHNDz0W1"crossorigin="anonymous"></script><script 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