diff test-data/fastqc_data_adapters.txt @ 0:e462044ece67 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/fastqc_data_adapters.txt	Tue Jun 04 14:14:49 2024 +0000
@@ -0,0 +1,1710 @@
+##Falco	1.2.2
+>>Basic Statistics	pass
+#Measure	Value
+Filename	1000trimmed_fastq
+File type	Conventional base calls
+Encoding	Sanger / Illumina 1.9
+Total Sequences	4905
+Sequences flagged as poor quality	0
+Sequence length	1-108
+%GC	41
+>>END_MODULE
+>>Per base sequence quality	pass
+#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
+1	29.2828	31	27	33	23	34
+2	28.8329	30	27	32	22	33
+3	28.897	30	27	32	23	34
+4	29.0068	30	27	32	23	34
+5	28.9378	30	27	32	22	34
+6	29.0029	30	27	32	23	34
+7	28.8998	30	27	32	22	34
+8	28.9007	30	27	32	22	33
+9	28.7546	30	27	32	22	34
+10-11	28.8221	30	27	32	22.5	33
+12-13	28.749	30	26.5	32	22	33
+14-15	28.5337	30	26	32	22	33.5
+16-17	28.5266	30	26	32	22	33
+18-19	28.6834	30	26	32	22.5	33
+20-21	28.3701	29.5	26	32	22	33
+22-23	28.1859	29	26	32	22	33
+24-25	28.1301	29	26	32	21.5	33
+26-27	28.0758	29	26	32	21.5	33
+28-29	27.828	29	25	32	21	33
+30-31	27.7928	29	25	31.5	21	33
+32-33	27.491	28	25	31	21	33
+34-35	27.3572	28	24.5	31	21	33
+36-37	27.0622	28	24	31	20.5	33
+38-39	27.238	28	24	31	21	33
+40-41	27.029	28	24	31	20.5	33
+42-43	26.9086	27	24	31	20.5	33
+44-45	26.632	27	24	30	20	32
+46-47	26.8304	27.5	24	31	20.5	32
+48-49	26.4317	27	23.5	30	20	32
+50-51	26.219	27	23	30	20	32
+52-53	25.9257	26.5	22.5	29.5	19.5	31.5
+54-55	27.9952	29.5	25.5	31.5	20.5	33
+56-57	30.4109	31.5	28.5	33	25.5	34
+58-59	30.4084	31.5	28.5	33	26	34
+60-61	30.4448	31.5	29	33	26	34
+62-63	30.4404	31.5	29	33	25.5	34
+64-65	30.4417	31.5	29	33	25.5	34
+66-67	30.5114	32	29	33	25.5	34
+68-69	30.0512	31	28	33	24.5	34
+70-71	30.2761	31	29	33	25	34
+72-73	30.3855	31.5	29	33	25.5	34
+74-75	30.2135	31	28.5	33	25.5	34
+76-77	29.6789	31	28	33	24.5	34
+78-79	30.0191	31	28	33	24.5	34
+80-81	29.6642	31	27.5	33	24	34
+82-83	29.6535	31	28	32.5	24.5	34
+84-85	29.4256	30.5	27	32	24	34
+86-87	29.3406	30	27	32.5	24	34
+88-89	28.7857	30	27	32	22.5	33.5
+90-91	28.6675	29.5	26	32	23	33
+92-93	28.5659	29	26	32	23	33
+94-95	28.2717	29	26	32	22.5	33
+96-97	27.9496	29	25.5	31	22	33
+98-99	27.3152	28	25	31	21.5	33
+100-101	27.6147	28	25	31	21.5	33
+102-103	27.1962	28	24.5	31	21	33
+104-105	26.8709	27.5	24	31	20	32.5
+106-107	26.3676	27	23.5	30	20.5	32
+108	27.5651	28	24	31	22	33
+>>END_MODULE
+>>Per tile sequence quality	fail
+#Tile	Base	Mean
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+10	85	1.62337
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+10	87	-1.89624
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+10	93	-0.71732
+10	94	2.33252
+10	95	-3.34069
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+10	100	-0.515523
+10	101	-1.59314
+10	102	1.67565
+10	103	3.30065
+10	104	1.91748
+10	105	-1.28676
+10	106	-2.16993
+10	107	1.53234
+10	108	1.7686
+>>END_MODULE
+>>Per sequence quality scores	pass
+#Quality	Count
+20	7
+21	24
+22	47
+23	78
+24	226
+25	513
+26	830
+27	1017
+28	947
+29	645
+30	352
+31	157
+32	55
+33	6
+34	1
+>>END_MODULE
+>>Per base sequence content	fail
+#Base	G	A	T	C
+1	21.2232	33.0071	25.9735	19.7961
+2	23.7658	31.4157	27.3154	17.5031
+3	21.8769	28.7058	29.4623	19.955
+4	21.5505	28.2953	28.8505	21.3037
+5	21.2191	30.2059	28.2713	20.3037
+6	22.1243	28.9463	26.3644	22.5651
+7	21.944	29.966	28.3956	19.6944
+8	21.3781	28.8252	27.8622	21.9345
+9	20.078	29.0882	28.655	22.1789
+10-11	21.2432	29.4689	27.6802	21.6076
+12-13	20.8277	29.037	29.1836	20.9517
+14-15	20.24	28.9753	29.4715	21.3132
+16-17	19.8387	29.3964	29.6217	21.1431
+18-19	20.8456	27.8715	29.9731	21.3099
+20-21	20.5382	28.9737	29.1114	21.3767
+22-23	20.8808	30.1295	29.3005	19.6891
+24-25	20.507	29.0773	29.0504	21.3653
+26-27	20.866	28.0549	30.3391	20.7399
+28-29	19.326	30.8425	28.7766	21.0549
+30-31	20.6388	29.1923	29.4994	20.6695
+32-33	19.4799	29.0099	29.3814	22.1289
+34-35	19.6674	29.7132	30.2053	20.4141
+36-37	20.4435	29.854	30.6111	19.0914
+38-39	20.9927	28.0417	30.0888	20.8768
+40-41	19.8602	28.6801	30.3248	21.1349
+42-43	20.0132	27.8732	30.8234	21.2902
+44-45	18.9414	30.1923	29.9549	20.9115
+46-47	20.1889	28.1266	31.4701	20.2144
+48-49	19.5616	29.6892	28.7736	21.9756
+50-51	20.5066	28.2576	30.7598	20.476
+52-53	17.6913	29.918	31.8648	20.526
+54-55	17.2149	32.3099	29.5322	20.943
+56-57	19.3086	30.8937	30.8937	18.904
+58-59	20.0147	29.7277	31.4202	18.8374
+60-61	17.4025	33.1862	29.507	19.9043
+62-63	18.543	29.7277	32.2664	19.4628
+64-65	16.8936	32.9407	30.1803	19.9853
+66-67	18.5199	28.9028	32.8056	19.7717
+68-69	17.268	30.3756	31.6642	20.6922
+70-71	17.673	27.7982	35.3461	19.1826
+72-73	16.2003	29.5287	33.8733	20.3976
+74-75	18.3726	28.0191	34.5361	19.0722
+76-77	16.6789	31.701	31.7378	19.8822
+78-79	18.7776	28.3873	32.6215	20.2135
+80-81	16.3844	30.9278	32.9161	19.7717
+82-83	17.0839	30.9278	32.5479	19.4404
+84-85	16.9367	31.5906	31.4433	20.0295
+86-87	17.489	27.9087	34.2047	20.3976
+88-89	16.7894	32.3638	31.0751	19.7717
+90-91	19.5876	29.7496	33.542	17.1208
+92-93	17.7467	30.0442	31.3328	20.8763
+94-95	18.9249	28.461	33.3947	19.2194
+96-97	16.4212	29.4183	32.4742	21.6863
+98-99	18.1581	29.3438	33.1469	19.3512
+100-101	17.7736	29.8491	33.283	19.0943
+102-103	18.3396	29.5094	30.9057	21.2453
+104-105	18.0377	28.6792	31.7736	21.5094
+106-107	17.2783	29.3578	33.5245	19.8394
+108	20.0535	26.3815	31.7291	21.836
+>>END_MODULE
+>>Per sequence GC content	warn
+#GC Content	Count
+0	15
+1	15.5
+2	16.5
+3	17
+4	18
+5	21.5
+6	26.5
+7	30
+8	33.5
+9	36
+10	41
+11	47
+12	47.5
+13	56
+14	65.5
+15	69
+16	72.5
+17	77.5
+18	85.5
+19	94.5
+20	105.5
+21	113
+22	120
+23	131.5
+24	150
+25	172.5
+26	198
+27	217.5
+28	244.5
+29	281.5
+30	314.5
+31	337
+32	365
+33	402.5
+34	436
+35	463
+36	481.5
+37	505
+38	525
+39	510.5
+40	490.5
+41	493
+42	487
+43	483.5
+44	488
+45	475.5
+46	468
+47	468.5
+48	477
+49	473
+50	437.5
+51	416
+52	405.5
+53	397
+54	386
+55	365
+56	346
+57	343
+58	334
+59	320
+60	319
+61	301.5
+62	276.5
+63	245.5
+64	207.5
+65	191
+66	182
+67	173
+68	167
+69	151.5
+70	131.5
+71	121
+72	117.5
+73	110.5
+74	104
+75	90.5
+76	75
+77	67.5
+78	62.5
+79	61.5
+80	59
+81	57
+82	55
+83	47
+84	39
+85	38
+86	36.5
+87	35.5
+88	28.5
+89	21
+90	19
+91	17
+92	15.5
+93	14.5
+94	14
+95	13.5
+96	14.5
+97	15.5
+98	15.5
+99	16
+100	15
+>>END_MODULE
+>>Per base N content	pass
+#Base	N-Count
+1	0
+2	0
+3	0
+4	0
+5	0
+6	0
+7	0
+8	0
+9	0
+10-11	0
+12-13	0
+14-15	0
+16-17	0
+18-19	0
+20-21	0
+22-23	0
+24-25	0
+26-27	0
+28-29	0
+30-31	0
+32-33	0
+34-35	0
+36-37	0
+38-39	0
+40-41	0
+42-43	0
+44-45	0
+46-47	0
+48-49	0
+50-51	0
+52-53	0
+54-55	0
+56-57	0
+58-59	0
+60-61	0
+62-63	0
+64-65	0
+66-67	0
+68-69	0
+70-71	0
+72-73	0
+74-75	0
+76-77	0
+78-79	0
+80-81	0
+82-83	0
+84-85	0
+86-87	0
+88-89	0
+90-91	0
+92-93	0
+94-95	0
+96-97	0
+98-99	0
+100-101	0
+102-103	0
+104-105	0
+106-107	0
+108	0
+>>END_MODULE
+>>Sequence Length Distribution	warn
+#Length	Count
+1	3.0
+2	11.0
+3	28.0
+4	56.0
+5	43.0
+6	52.0
+7	39.0
+8	56.0
+9	60.0
+10	57.0
+11	43.0
+12	46.0
+13	45.0
+14	66.0
+15	59.0
+16	49.0
+17	73.0
+18	54.0
+19	44.0
+20	52.0
+21	73.0
+22	72.0
+23	68.0
+24	56.0
+25	86.0
+26	92.0
+27	75.0
+28	69.0
+29	74.0
+30	96.0
+31	72.0
+32	81.0
+33	65.0
+34	87.0
+35	86.0
+36	87.0
+37	100.0
+38	82.0
+39	78.0
+40	76.0
+41	79.0
+42	88.0
+43	83.0
+44	75.0
+45	74.0
+46	72.0
+47	84.0
+48	74.0
+49	81.0
+50	91.0
+51	80.0
+52	98.0
+53	43.0
+54	8.0
+55	4.0
+56	1.0
+64	1.0
+97	1.0
+98	32.0
+106	34.0
+107	169.0
+108	1122.0
+>>END_MODULE
+>>Sequence Duplication Levels	pass
+#Total Deduplicated Percentage	98.736
+#Duplication Level	Percentage of deduplicated	Percentage of total
+1	99.4425	98.1855
+2	0.474912	0.937819
+3	0.0412967	0.122324
+4	0.0206484	0.0815494
+5	0	0
+6	0	0
+7	0	0
+8	0	0
+9	0	0
+>10	0.0206484	0.672783
+>50	0	0
+>100	0	0
+>500	0	0
+>1k	0	0
+>5k	0	0
+>10k+	0	0
+>>END_MODULE
+>>Overrepresented sequences	warn
+#Sequence	Count	Percentage	Possible Source
+ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCAT	33	0.672783	No Hit
+>>END_MODULE
+>>Adapter Content	pass
+#Position	Illumina Universal Adapter	Illumina Small RNA 3 prime Adapter	Illumina Small RNA 5 prime Adapter	Nextera Transposase Sequence	SOLID Small RNA Adapter
+1	0	0	0	0	0
+2	0	0	0	0	0
+3	0	0	0	0	0
+4	0	0	0	0	0
+5	0	0	0	0	0
+6	0	0	0	0	0
+7	0	0	0	0	0
+8	0	0	0	0	0
+9	0	0	0	0	0
+10	0	0	0	0	0
+11	0	0	0	0	0
+12	0	0	0	0	0
+13	0	0	0	0	0
+14	0	0	0	0	0
+15	0	0	0	0	0
+16	0	0	0	0	0
+17	0	0	0	0	0
+18	0	0	0	0	0
+19	0	0	0	0	0
+20	0.122324	0	0	0	0
+21	0.122324	0	0	0	0
+22	0.122324	0	0	0	0
+23	0.122324	0	0	0	0
+24	0.122324	0	0	0	0
+25	0.122324	0	0	0	0
+26	0.122324	0	0	0	0
+27	0.142712	0	0	0	0
+28	0.183486	0	0	0	0
+29	0.224261	0	0	0	0
+30	0.224261	0	0	0	0
+31	0.224261	0	0	0	0
+32	0.224261	0	0	0	0
+33	0.224261	0	0	0	0
+34	0.224261	0	0	0	0
+35	0.265036	0	0	0	0
+36	0.285423	0	0	0	0
+37	0.326198	0	0	0	0
+38	0.407747	0	0	0	0
+39	0.468909	0	0	0	0
+40	0.468909	0	0	0	0
+41	0.468909	0	0	0	0
+42	0.468909	0	0	0	0
+43	0.468909	0	0	0	0
+44	0.468909	0	0	0	0
+45	0.468909	0	0	0	0
+46	0.468909	0	0	0	0
+47	0.468909	0	0	0	0
+48	0.468909	0	0	0	0
+49	0.468909	0	0	0	0
+50	0.468909	0	0	0	0
+51	0.468909	0	0	0	0
+52	0.468909	0	0	0	0
+53	0.468909	0	0	0	0
+54	0.468909	0	0	0	0
+55	0.468909	0	0	0	0
+56	0.468909	0	0	0	0
+57	0.468909	0	0	0	0
+58	0.468909	0	0	0	0
+59	0.468909	0	0	0	0
+60	0.468909	0	0	0	0
+61	0.468909	0	0	0	0
+62	0.468909	0	0	0	0
+63	0.468909	0	0	0	0
+64	0.468909	0	0	0	0
+65	0.468909	0	0	0	0
+66	0.468909	0	0	0	0
+67	0.468909	0	0	0	0
+68	0.468909	0	0	0	0
+69	0.468909	0	0	0	0
+70	0.468909	0	0	0	0
+71	0.468909	0	0	0	0
+72	0.468909	0	0	0	0
+73	0.468909	0	0	0	0
+74	0.489297	0	0	0	0
+75	0.489297	0	0	0	0
+76	0.489297	0	0	0	0
+77	0.489297	0	0	0	0
+78	0.489297	0	0	0	0
+79	0.489297	0	0	0	0
+80	0.489297	0	0	0	0
+81	0.489297	0	0	0	0
+82	0.489297	0	0	0	0
+83	0.509684	0	0	0	0
+84	0.509684	0	0	0	0
+85	0.509684	0	0	0	0
+86	0.509684	0	0	0	0
+87	0.509684	0	0	0	0
+88	0.509684	0	0	0	0
+89	0.509684	0	0	0	0
+90	0.509684	0	0	0	0
+91	0.509684	0	0	0	0
+92	0.570846	0	0	0	0
+93	0.632008	0	0	0	0
+94	0.632008	0	0	0	0
+95	0.632008	0	0	0	0
+96	0.632008	0	0	0	0
+97	0.632008	0	0	0	0
+98	0.632008	0	0	0	0
+99	0.632008	0	0	0	0
+100	0.632008	0	0	0	0
+101	0.632008	0	0	0	0
+102	0.632008	0	0	0	0
+103	0.632008	0	0	0	0
+104	0.632008	0	0	0	0
+105	0.632008	0	0	0	0
+106	0.632008	0	0	0	0
+107	0.632008	0	0	0	0
+108	0.632008	0	0	0	0
+>>END_MODULE