Mercurial > repos > iuc > fargene
annotate test-data/paired/hmmsearchresults/orfs-class_B_1_2-hmmsearched.out @ 0:6f743c615c41 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene commit 867e4a6fad4c2622ad69517e2d4d9ba185109b72"
author | iuc |
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date | Thu, 28 Nov 2019 14:39:41 -0500 |
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6f743c615c41
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene commit 867e4a6fad4c2622ad69517e2d4d9ba185109b72"
iuc
parents:
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1 # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord |
6f743c615c41
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene commit 867e4a6fad4c2622ad69517e2d4d9ba185109b72"
iuc
parents:
diff
changeset
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2 # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target |
6f743c615c41
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene commit 867e4a6fad4c2622ad69517e2d4d9ba185109b72"
iuc
parents:
diff
changeset
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3 # ------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- |
6f743c615c41
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene commit 867e4a6fad4c2622ad69517e2d4d9ba185109b72"
iuc
parents:
diff
changeset
|
4 lcl|NODE_1_length_935_cov_39.160227_seq1:c932-117_1 - 272 b1_b2_70_centroids-aligned - 248 5.2e-85 270.8 0.0 1 1 6.2e-85 6.2e-85 270.6 0.0 7 244 18 269 11 271 0.94 ORF4_NODE_1_length_935_cov_39.160227_seq1:931:116 |
6f743c615c41
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene commit 867e4a6fad4c2622ad69517e2d4d9ba185109b72"
iuc
parents:
diff
changeset
|
5 # |
6f743c615c41
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene commit 867e4a6fad4c2622ad69517e2d4d9ba185109b72"
iuc
parents:
diff
changeset
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6 # Program: hmmsearch |
6f743c615c41
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene commit 867e4a6fad4c2622ad69517e2d4d9ba185109b72"
iuc
parents:
diff
changeset
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7 # Version: 3.2.1 (June 2018) |
6f743c615c41
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene commit 867e4a6fad4c2622ad69517e2d4d9ba185109b72"
iuc
parents:
diff
changeset
|
8 # Pipeline mode: SEARCH |
6f743c615c41
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene commit 867e4a6fad4c2622ad69517e2d4d9ba185109b72"
iuc
parents:
diff
changeset
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9 # Query file: /home/ubuntu/data/miniconda2/envs/fargene/lib/python2.7/site-packages/fargene_analysis/models/class_B_1_2.hmm |
6f743c615c41
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene commit 867e4a6fad4c2622ad69517e2d4d9ba185109b72"
iuc
parents:
diff
changeset
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10 # Target file: /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_1/tmpdir/orfs-translated.fasta |
6f743c615c41
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene commit 867e4a6fad4c2622ad69517e2d4d9ba185109b72"
iuc
parents:
diff
changeset
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11 # Option settings: hmmsearch --domtblout /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_1/hmmsearchresults/orfs-class_B_1_2-hmmsearched.out -E 1000 --domE 1000 /home/ubuntu/data/miniconda2/envs/fargene/lib/python2.7/site-packages/fargene_analysis/models/class_B_1_2.hmm /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_1/tmpdir/orfs-translated.fasta |
6f743c615c41
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene commit 867e4a6fad4c2622ad69517e2d4d9ba185109b72"
iuc
parents:
diff
changeset
|
12 # Current dir: /home/ubuntu/data/fargene/tutorial/tutorialdata |
6f743c615c41
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene commit 867e4a6fad4c2622ad69517e2d4d9ba185109b72"
iuc
parents:
diff
changeset
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13 # Date: Tue Jul 16 12:47:15 2019 |
6f743c615c41
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene commit 867e4a6fad4c2622ad69517e2d4d9ba185109b72"
iuc
parents:
diff
changeset
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14 # [ok] |