Mercurial > repos > iuc > fasta_stats
annotate test-data/test_02.tab @ 4:0dbb995c7d35 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
author | iuc |
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date | Thu, 18 Nov 2021 20:56:57 +0000 |
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4
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
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1 Scaffold L50 2 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
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2 Scaffold N50 604 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
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3 Scaffold L90 7 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
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4 Scaffold N90 140 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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5 Scaffold NG50 604 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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6 Scaffold len_max 1501 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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7 Scaffold len_min 30 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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8 Scaffold len_mean 324 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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9 Scaffold len_median 182 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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10 Scaffold len_std 405 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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11 Scaffold num_A 895 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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12 Scaffold num_T 778 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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13 Scaffold num_C 940 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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14 Scaffold num_G 807 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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15 Scaffold num_N 145 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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16 Scaffold num_bp 3565 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
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17 Scaffold num_bp_not_N 3420 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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18 Scaffold num_seq 11 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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19 Scaffold GC content overall 49.00 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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20 Contig L50 3 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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21 Contig N50 489 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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22 Contig L90 8 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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23 Contig N90 140 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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24 Contig NG50 388 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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25 Contig len_max 867 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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26 Contig len_min 30 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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27 Contig len_mean 285 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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28 Contig len_median 204 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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29 Contig len_std 245 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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30 Contig num_bp 3420 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
diff
changeset
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31 Contig num_seq 12 |
0dbb995c7d35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit 50f5cce5a8c11001e2c59600a2b99a4243b6d06f"
iuc
parents:
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32 Number of gaps 1 |