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comparison fastk.xml @ 2:87f4b4dced3e draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 1bb40ad9eb4ca65fc22adfd08acc31a7c854960a
author iuc
date Thu, 16 May 2024 13:49:33 +0000
parents b820ef95ca20
children
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1:b820ef95ca20 2:87f4b4dced3e
22 -t$sorted_table_cutoff 22 -t$sorted_table_cutoff
23 #end if 23 #end if
24 -T\${GALAXY_SLOTS:-8} -Noutfiles/output -Poutfiles/ktabfiles 24 -T\${GALAXY_SLOTS:-8} -Noutfiles/output -Poutfiles/ktabfiles
25 #if $sorted_table.sorted_table_option == 'yes_with_default': 25 #if $sorted_table.sorted_table_option == 'yes_with_default':
26 && Tabex outfiles/output.ktab -t${sorted_table.tabex_threshold_for_default} LIST > '$tabex_hist' 26 && Tabex outfiles/output.ktab -t${sorted_table.tabex_threshold_for_default} LIST > '$tabex_hist'
27 && mv outfiles/.*.ktab* outfiles/ktabfiles 27 && cp outfiles/.*.ktab* outfiles/ktabfiles
28 && mv outfiles/*.ktab outfiles/ktabfiles 28 && cp outfiles/*.ktab outfiles/ktabfiles
29 #elif $sorted_table.sorted_table_option == 'yes_with_custom': 29 #elif $sorted_table.sorted_table_option == 'yes_with_custom':
30 && Tabex outfiles/output.ktab -t${sorted_table.tabex_threshold_for_custom} LIST > '$tabex_hist' 30 && Tabex outfiles/output.ktab -t${sorted_table.tabex_threshold_for_custom} LIST > '$tabex_hist'
31 && mv outfiles/.*.ktab* outfiles/ktabfiles 31 && cp outfiles/.*.ktab* outfiles/ktabfiles
32 && mv outfiles/*.ktab outfiles/ktabfiles 32 && cp outfiles/*.ktab outfiles/ktabfiles
33 #end if 33 #end if
34 && tar -c -f fastk.tar ./outfiles/ 34 && tar -c -f fastk.tar ./outfiles/
35 ]]></command> 35 ]]></command>
36 <inputs> 36 <inputs>
37 <param name="infile" type="data" format="fasta,fasta.gz,fastq,fastq.gz,cram,unsorted.bam,sam" label="Input file"/> 37 <param name="infile" type="data" format="fasta,fasta.gz,fastq,fastq.gz,cram,unsorted.bam,sam" label="Input file"/>