Mercurial > repos > iuc > fastp
comparison macros.xml @ 13:dbfc505896e9 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastp commit 78e6d7efcb74d3baa4e5611a7be4ad82b51bfe0d
| author | iuc |
|---|---|
| date | Tue, 15 Oct 2024 11:45:19 +0000 |
| parents | d60c3f704da0 |
| children |
comparison
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| 12:d60c3f704da0 | 13:dbfc505896e9 |
|---|---|
| 41 </valid> | 41 </valid> |
| 42 </sanitizer> | 42 </sanitizer> |
| 43 </param> | 43 </param> |
| 44 </xml> | 44 </xml> |
| 45 | 45 |
| 46 <xml name="merge_reads"> | |
| 47 <conditional name="merge_reads"> | |
| 48 <param argument="--merge" type="select" label="Merge forward and revese reads?"> | |
| 49 <option value="">No</option> | |
| 50 <option value="--merge">Yes</option> | |
| 51 </param> | |
| 52 <when value="--merge"> | |
| 53 <param argument="--include_unmerged" type="boolean" truevalue="--include_unmerged" falsevalue="" checked="false" label="Include unmerged outputs into merged output file" /> | |
| 54 </when> | |
| 55 <when value="" /> | |
| 56 </conditional> | |
| 57 </xml> | |
| 58 | |
| 46 <xml name="detect_adapter_for_pe"> | 59 <xml name="detect_adapter_for_pe"> |
| 47 <param argument="--detect_adapter_for_pe" type="boolean" truevalue="--detect_adapter_for_pe" falsevalue="" checked="false" label="Adapter sequence auto-detection for paired-end" /> | 60 <param argument="--detect_adapter_for_pe" type="boolean" truevalue="--detect_adapter_for_pe" falsevalue="" checked="false" label="Adapter sequence auto-detection for paired-end" /> |
| 48 </xml> | 61 </xml> |
| 49 | 62 |
| 50 <xml name="in" token_read_number="1" token_argument="-i"> | 63 <xml name="in" token_read_number="1" token_argument="-i"> |
| 51 <param name="in@READ_NUMBER@" argument="@ARGUMENT@" type="data" format="fastq,fastq.gz" label="Input @READ_NUMBER@" help="Input FASTQ file #@READ_NUMBER@"/> | 64 <param name="in@READ_NUMBER@" argument="@ARGUMENT@" type="data" format="fastqsanger,fastqsanger.gz,fastqillumina,fastqillumina.gz" label="Input @READ_NUMBER@" help="Input FASTQ file #@READ_NUMBER@"/> |
| 52 </xml> | 65 </xml> |
| 53 | 66 |
| 54 <xml name="poly_g_min_len"> | 67 <xml name="poly_g_min_len"> |
| 55 <param argument="--poly_g_min_len" type="integer" optional="true" label="PolyG minimum length" | 68 <param argument="--poly_g_min_len" type="integer" optional="true" label="PolyG minimum length" |
| 56 help="The minimum length to detect polyG in the read tail. 10 by default."/> | 69 help="The minimum length to detect polyG in the read tail. 10 by default."/> |