view test-data/Metadata_files/ERR2651925.tsv @ 1:3f1ee30e39e9 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastq_dl commit 4f31c74918fc999e01c3e8bc1156ecd79efbc39b

run_accession	experiment_title	sample_accession	project_name	submission_accession	library_min_fragment_size	bam_md5	assembly_software	library_prep_longitude	library_selection	pcr_isolation_protocol	chip_protocol	sequencing_primer_provider	serotype	environment_feature	last_updated	submitted_galaxy	extraction_protocol	germline	secondary_project	culture_collection	submission_tool	sra_bytes	read_strand	rna_purity_280_ratio	hi_c_protocol	collected_by	submitted_ftp	restriction_enzyme_target_sequence	isolate	fastq_bytes	instrument_platform	variety	sequencing_date_format	temperature	sra_aspera	ecotype	submitted_aspera	sampling_campaign	bam_ftp	tissue_lib	environmental_sample	control_experiment	sex	submitted_md5	checklist	fastq_galaxy	library_gen_protocol	specimen_voucher	library_prep_latitude	submitted_bytes	taxonomic_identity_marker	run_date	country	ncbi_reporting_standard	sample_description	sra_galaxy	sample_prep_interval	fastq_md5	secondary_study_accession	experimental_protocol	read_count	study_title	bio_material	rna_prep_5_protocol	host_body_site	local_environmental_context	assembly_quality	collection_date_end	sample_capture_status	sample_title	host_genotype	host_phenotype	environmental_medium	cultivar	instrument_model	faang_library_selection	target_gene	bam_bytes	library_max_fragment_size	experiment_target	sequencing_date	description	nominal_sdev	chip_ab_provider	environment_material	host_tax_id	sample_material	sample_storage_processing	sra_md5	cell_type	fastq_ftp	disease	sample_prep_interval_units	broker_name	sub_strain	base_count	library_strategy	restriction_site	serovar	investigation_type	location	library_source	sra_ftp	age	library_layout	experimental_factor	sequencing_primer_catalog	environment_biome	rna_purity_230_ratio	dnase_protocol	dev_stage	library_prep_date_format	bam_aspera	binning_software	datahub	rna_integrity_num	library_prep_date	location_start	marine_region	aligned	file_location	sample_collection	chip_target	nominal_length	broad_scale_environmental_context	sequencing_location	status	completeness_score	lon	fastq_aspera	tax_lineage	host_sex	library_pcr_isolation_protocol	sample_alias	mating_type	collection_date_start	sub_species	contamination_score	run_alias	restriction_enzyme	depth	submitted_read_type	library_construction_protocol	host_growth_conditions	collection_date	experiment_alias	host_gravidity	center_name	identified_by	cell_line	sampling_site	host	library_name	tag	first_created	lat	strain	experiment_accession	scientific_name	host_status	tax_id	study_accession	submitted_format	submitted_host_sex	bisulfite_protocol	altitude	rt_prep_protocol	host_scientific_name	bam_galaxy	accession	secondary_sample_accession	sample_storage	cage_protocol	sampling_platform	taxonomic_classification	location_end	protocol_label	elevation	salinity	sequencing_method	sequencing_primer_lot	first_public	transposase_protocol	study_alias	library_prep_location	rna_prep_3_protocol	ph	sequencing_longitude	tissue_type	isolation_source
ERR2651925	Illumina MiSeq paired end sequencing	SAMEA4724129		ERA1521386					PCR						2018-11-16	ftp.sra.ebi.ac.uk/vol1/run/ERR265/ERR2651925/HDG2C-2016-10-r2-ITS_ACAGAC_L001_R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR265/ERR2651925/HDG2C-2016-10-r2-ITS_ACAGAC_L001_R2.fastq.gz						14052012				Lydie Kerdraon	ftp.sra.ebi.ac.uk/vol1/run/ERR265/ERR2651925/HDG2C-2016-10-r2-ITS_ACAGAC_L001_R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR265/ERR2651925/HDG2C-2016-10-r2-ITS_ACAGAC_L001_R2.fastq.gz			4977454;6079979	ILLUMINA				fasp.sra.ebi.ac.uk:/vol1/err/ERR265/005/ERR2651925		fasp.sra.ebi.ac.uk:/vol1/run/ERR265/ERR2651925/HDG2C-2016-10-r2-ITS_ACAGAC_L001_R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR265/ERR2651925/HDG2C-2016-10-r2-ITS_ACAGAC_L001_R2.fastq.gz							37493c0f131917a24acf4c535dc5b6b0;47d07f4bc698f774cc66d5d3111b8e60	ERC000011	ftp.sra.ebi.ac.uk/vol1/fastq/ERR265/005/ERR2651925/ERR2651925_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR265/005/ERR2651925/ERR2651925_2.fastq.gz				4821716;5918907			France		ITS1 region associated to Crop residues of Wheat (Rotation)	ftp.sra.ebi.ac.uk/vol1/err/ERR265/005/ERR2651925		6a1679e27fac1783e3c752cf89a6eb3f;d9795cac381bfcce1acb09a94729a280	ERP109315		49902	Microbial assemblages associated to crop residues						2016-10-31		Crop residues of Wheat (Rotation)				Soissons	Illumina MiSeq							Illumina MiSeq paired end sequencing							1fde860669a32db7f8a9e46b6491fa77		ftp.sra.ebi.ac.uk/vol1/fastq/ERR265/005/ERR2651925/ERR2651925_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR265/005/ERR2651925/ERR2651925_2.fastq.gz					24951000	AMPLICON					METAGENOMIC	ftp.sra.ebi.ac.uk/vol1/err/ERR265/005/ERR2651925		PAIRED										dcc_metagenome									425			public			fasp.sra.ebi.ac.uk:/vol1/fastq/ERR265/005/ERR2651925/ERR2651925_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR265/005/ERR2651925/ERR2651925_2.fastq.gz	1;131567;2759;33090;35493;131221;3193;58023;78536;58024;3398;1437183;4447;1437197;4734;38820;4479;359160;147368;1648038;147389;1648030;4564;4565			HDG2C.2016.10.r2.ITS_ACAGAC		2016-09-30			ena-RUN-IRHS-19-06-2018-10:38:11:697-377			PAIRED;PAIRED	PCR based protocol		2016-10	ena-EXPERIMENT-IRHS-19-06-2018-10:38:11:697-377		IRHS					PCR_ITS1		2018-06-19			ERX2668415	Triticum aestivum		4565	PRJEB27255	FASTQ;FASTQ							ERR2651925	ERS2544267											2018-11-30		ena-STUDY-IRHS-12-06-2018-07:39:33:052-533						Crop residues