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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit dd2bada7005c72c16cd3ea047cdc64896c1f8977
author iuc
date Wed, 13 Jan 2016 17:57:35 -0500
parents 2611a96c30b7
children
comparison
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2:2611a96c30b7 3:5fb45d8bbc07
1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Strict//EN">
2 <html>
3 <head><title>1000gsample.fastq FastQC Report</title>
4
5 <style type="text/css">
6
7 @media screen {
8 div.summary {
9 width: 18em;
10 position:fixed;
11 top: 3em;
12 margin:1em 0 0 1em;
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14
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132 padding-top:1.5em;
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193 </style>
194
195 </head>
196 <body>
197 <div class="header">
198 <div id="header_title"><img src="fastqc_icon.png" alt="FastQC">FastQC Report</div>
199 <div id="header_filename">
200 Sat 8 Jun 2013<br />
201 1000gsample.fastq
202 </div>
203 </div>
204 <div class="summary">
205 <h2>Summary</h2>
206 <ul>
207 <li><img src="tick.png" alt="[PASS]"> <a href="#M0">Basic Statistics</a></li>
208 <li><img src="warning.png" alt="[WARNING]"> <a href="#M1">Per base sequence quality</a></li>
209 <li><img src="warning.png" alt="[WARNING]"> <a href="#M2">Per sequence quality scores</a></li>
210 <li><img src="warning.png" alt="[WARNING]"> <a href="#M3">Per base sequence content</a></li>
211 <li><img src="tick.png" alt="[PASS]"> <a href="#M4">Per base GC content</a></li>
212 <li><img src="warning.png" alt="[WARNING]"> <a href="#M5">Per sequence GC content</a></li>
213 <li><img src="tick.png" alt="[PASS]"> <a href="#M6">Per base N content</a></li>
214 <li><img src="tick.png" alt="[PASS]"> <a href="#M7">Sequence Length Distribution</a></li>
215 <li><img src="tick.png" alt="[PASS]"> <a href="#M8">Sequence Duplication Levels</a></li>
216 <li><img src="warning.png" alt="[WARNING]"> <a href="#M9">Overrepresented sequences</a></li>
217 <li><img src="error.png" alt="[FAIL]"> <a href="#M10">Kmer Content</a></li>
218 </ul>
219 </div>
220 <div class="main">
221 <div class="module"><h2 id="M0"><img src="tick.png" alt="[OK]"> Basic Statistics</h2>
222 <table>
223 <tr>
224 <th>Measure</th>
225 <th>Value</th>
226 </tr>
227 <tr>
228 <td>Filename</td>
229 <td>1000gsample.fastq</td>
230 </tr>
231 <tr>
232 <td>File type</td>
233 <td>Conventional base calls</td>
234 </tr>
235 <tr>
236 <td>Encoding</td>
237 <td>Sanger / Illumina 1.9</td>
238 </tr>
239 <tr>
240 <td>Total Sequences</td>
241 <td>5000</td>
242 </tr>
243 <tr>
244 <td>Filtered Sequences</td>
245 <td>0</td>
246 </tr>
247 <tr>
248 <td>Sequence length</td>
249 <td>54</td>
250 </tr>
251 <tr>
252 <td>%GC</td>
253 <td>43</td>
254 </tr>
255 </table>
256 </div>
257 <div class="module"><h2 id="M1"><img src="warning.png" alt="[WARN]"> Per base sequence quality</h2>
258 <p><img class="indented" src="per_base_quality.png" alt="Per base quality graph"></p>
259 </div>
260 <div class="module"><h2 id="M2"><img src="warning.png" alt="[WARN]"> Per sequence quality scores</h2>
261 <p><img class="indented" src="per_sequence_quality.png" alt="Per Sequence quality graph"></p>
262 </div>
263 <div class="module"><h2 id="M3"><img src="warning.png" alt="[WARN]"> Per base sequence content</h2>
264 <p><img class="indented" src="per_base_sequence_content.png" alt="Per base sequence content"></p>
265 </div>
266 <div class="module"><h2 id="M4"><img src="tick.png" alt="[OK]"> Per base GC content</h2>
267 <p><img class="indented" src="per_base_gc_content.png" alt="Per base GC content graph"></p>
268 </div>
269 <div class="module"><h2 id="M5"><img src="warning.png" alt="[WARN]"> Per sequence GC content</h2>
270 <p><img class="indented" src="per_sequence_gc_content.png" alt="Per sequence GC content graph"></p>
271 </div>
272 <div class="module"><h2 id="M6"><img src="tick.png" alt="[OK]"> Per base N content</h2>
273 <p><img class="indented" src="per_base_n_content.png" alt="N content graph"></p>
274 </div>
275 <div class="module"><h2 id="M7"><img src="tick.png" alt="[OK]"> Sequence Length Distribution</h2>
276 <p><img class="indented" src="sequence_length_distribution.png" alt="Sequence length distribution"></p>
277 </div>
278 <div class="module"><h2 id="M8"><img src="tick.png" alt="[OK]"> Sequence Duplication Levels</h2>
279 <p><img class="indented" src="duplication_levels.png" alt="Duplication level graph"></p>
280 </div>
281 <div class="module"><h2 id="M9"><img src="warning.png" alt="[WARN]"> Overrepresented sequences</h2>
282 <table>
283 <tr>
284 <th>Sequence</th>
285 <th>Count</th>
286 <th>Percentage</th>
287 <th>Possible Source</th>
288 </tr>
289 <tr>
290 <td>CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT</td>
291 <td>7</td>
292 <td>0.13999999999999999</td>
293 <td>Illumina Paired End PCR Primer 2 (96% over 33bp)</td>
294 </tr>
295 <tr>
296 <td>CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC</td>
297 <td>7</td>
298 <td>0.13999999999999999</td>
299 <td>Illumina Paired End PCR Primer 2 (100% over 35bp)</td>
300 </tr>
301 </table>
302 </div>
303 <div class="module"><h2 id="M10"><img src="error.png" alt="[FAIL]"> Kmer Content</h2>
304 <p><img class="indented" src="kmer_profiles.png" alt="Kmer graph"></p>
305 <table>
306 <tr>
307 <th>Sequence</th>
308 <th>Count</th>
309 <th>Obs/Exp Overall</th>
310 <th>Obs/Exp Max</th>
311 <th>Max Obs/Exp Position</th>
312 </tr>
313 <tr>
314 <td>CCCCC</td>
315 <td>1180</td>
316 <td>9.957459</td>
317 <td>29.638031</td>
318 <td>50</td>
319 </tr>
320 <tr>
321 <td>AAAAA</td>
322 <td>2175</td>
323 <td>4.133217</td>
324 <td>7.129659</td>
325 <td>47</td>
326 </tr>
327 <tr>
328 <td>CTCCC</td>
329 <td>555</td>
330 <td>3.668942</td>
331 <td>11.56272</td>
332 <td>11</td>
333 </tr>
334 <tr>
335 <td>CCTCC</td>
336 <td>525</td>
337 <td>3.4706206</td>
338 <td>11.56272</td>
339 <td>14</td>
340 </tr>
341 <tr>
342 <td>CTGGG</td>
343 <td>465</td>
344 <td>3.0945942</td>
345 <td>8.331139</td>
346 <td>39</td>
347 </tr>
348 <tr>
349 <td>GGGGG</td>
350 <td>350</td>
351 <td>2.9865708</td>
352 <td>12.818572</td>
353 <td>41</td>
354 </tr>
355 <tr>
356 <td>TGGAA</td>
357 <td>800</td>
358 <td>2.9261596</td>
359 <td>6.397646</td>
360 <td>17</td>
361 </tr>
362 <tr>
363 <td>CCCAG</td>
364 <td>455</td>
365 <td>2.855999</td>
366 <td>9.429343</td>
367 <td>40</td>
368 </tr>
369 <tr>
370 <td>GAATG</td>
371 <td>775</td>
372 <td>2.8347175</td>
373 <td>10.053445</td>
374 <td>20</td>
375 </tr>
376 <tr>
377 <td>GTGTG</td>
378 <td>530</td>
379 <td>2.763172</td>
380 <td>7.8240557</td>
381 <td>33</td>
382 </tr>
383 <tr>
384 <td>GGGAG</td>
385 <td>435</td>
386 <td>2.7487729</td>
387 <td>6.3220544</td>
388 <td>43</td>
389 </tr>
390 <tr>
391 <td>TGTGT</td>
392 <td>670</td>
393 <td>2.7303638</td>
394 <td>6.109576</td>
395 <td>27</td>
396 </tr>
397 <tr>
398 <td>ATGGA</td>
399 <td>735</td>
400 <td>2.688409</td>
401 <td>6.397646</td>
402 <td>20</td>
403 </tr>
404 <tr>
405 <td>GGAAT</td>
406 <td>730</td>
407 <td>2.6701207</td>
408 <td>7.3115954</td>
409 <td>19</td>
410 </tr>
411 <tr>
412 <td>GCTGG</td>
413 <td>400</td>
414 <td>2.6620166</td>
415 <td>8.322799</td>
416 <td>31</td>
417 </tr>
418 <tr>
419 <td>GGAGG</td>
420 <td>420</td>
421 <td>2.6539874</td>
422 <td>7.9104857</td>
423 <td>40</td>
424 </tr>
425 <tr>
426 <td>GCAGG</td>
427 <td>405</td>
428 <td>2.5535064</td>
429 <td>14.17877</td>
430 <td>16</td>
431 </tr>
432 <tr>
433 <td>CCTGG</td>
434 <td>375</td>
435 <td>2.4900866</td>
436 <td>6.6367774</td>
437 <td>7</td>
438 </tr>
439 <tr>
440 <td>CAGCC</td>
441 <td>390</td>
442 <td>2.4479992</td>
443 <td>6.279937</td>
444 <td>38</td>
445 </tr>
446 <tr>
447 <td>GGCTG</td>
448 <td>365</td>
449 <td>2.4290898</td>
450 <td>9.97737</td>
451 <td>24</td>
452 </tr>
453 <tr>
454 <td>TGGGA</td>
455 <td>490</td>
456 <td>2.4202447</td>
457 <td>7.40506</td>
458 <td>20</td>
459 </tr>
460 <tr>
461 <td>CCAGC</td>
462 <td>385</td>
463 <td>2.4166145</td>
464 <td>6.286229</td>
465 <td>41</td>
466 </tr>
467 <tr>
468 <td>AATGG</td>
469 <td>660</td>
470 <td>2.4140818</td>
471 <td>5.4836965</td>
472 <td>18</td>
473 </tr>
474 <tr>
475 <td>GCCTG</td>
476 <td>360</td>
477 <td>2.3904827</td>
478 <td>8.295971</td>
479 <td>5</td>
480 </tr>
481 <tr>
482 <td>GCCTC</td>
483 <td>360</td>
484 <td>2.3851626</td>
485 <td>6.6286345</td>
486 <td>31</td>
487 </tr>
488 <tr>
489 <td>CCCTC</td>
490 <td>360</td>
491 <td>2.379854</td>
492 <td>8.267352</td>
493 <td>34</td>
494 </tr>
495 <tr>
496 <td>CTGTG</td>
497 <td>450</td>
498 <td>2.3408678</td>
499 <td>9.09864</td>
500 <td>44</td>
501 </tr>
502 <tr>
503 <td>GGAAG</td>
504 <td>500</td>
505 <td>2.3397229</td>
506 <td>14.031037</td>
507 <td>2</td>
508 </tr>
509 <tr>
510 <td>CAGCA</td>
511 <td>500</td>
512 <td>2.32932</td>
513 <td>10.47649</td>
514 <td>14</td>
515 </tr>
516 <tr>
517 <td>CAGGA</td>
518 <td>495</td>
519 <td>2.3111706</td>
520 <td>13.99981</td>
521 <td>17</td>
522 </tr>
523 <tr>
524 <td>TCCCA</td>
525 <td>470</td>
526 <td>2.305994</td>
527 <td>7.370469</td>
528 <td>39</td>
529 </tr>
530 <tr>
531 <td>CTGCC</td>
532 <td>345</td>
533 <td>2.285781</td>
534 <td>8.277508</td>
535 <td>10</td>
536 </tr>
537 <tr>
538 <td>GGTGG</td>
539 <td>340</td>
540 <td>2.2677608</td>
541 <td>5.009832</td>
542 <td>42</td>
543 </tr>
544 <tr>
545 <td>CCAGG</td>
546 <td>360</td>
547 <td>2.264732</td>
548 <td>6.300251</td>
549 <td>41</td>
550 </tr>
551 <tr>
552 <td>TTCCT</td>
553 <td>555</td>
554 <td>2.2516627</td>
555 <td>7.0961456</td>
556 <td>1</td>
557 </tr>
558 <tr>
559 <td>TCCCC</td>
560 <td>335</td>
561 <td>2.2145865</td>
562 <td>8.267353</td>
563 <td>29</td>
564 </tr>
565 <tr>
566 <td>CAGGC</td>
567 <td>350</td>
568 <td>2.2018228</td>
569 <td>6.300251</td>
570 <td>42</td>
571 </tr>
572 <tr>
573 <td>CTCCT</td>
574 <td>425</td>
575 <td>2.2009897</td>
576 <td>6.4701333</td>
577 <td>15</td>
578 </tr>
579 <tr>
580 <td>GGCAG</td>
581 <td>340</td>
582 <td>2.1436844</td>
583 <td>6.301676</td>
584 <td>16</td>
585 </tr>
586 <tr>
587 <td>CCCCA</td>
588 <td>340</td>
589 <td>2.129403</td>
590 <td>6.26596</td>
591 <td>31</td>
592 </tr>
593 <tr>
594 <td>CTCTG</td>
595 <td>410</td>
596 <td>2.1280441</td>
597 <td>5.1928453</td>
598 <td>48</td>
599 </tr>
600 <tr>
601 <td>TGGTG</td>
602 <td>405</td>
603 <td>2.1114805</td>
604 <td>6.520046</td>
605 <td>33</td>
606 </tr>
607 <tr>
608 <td>TTCCA</td>
609 <td>545</td>
610 <td>2.094778</td>
611 <td>6.7295837</td>
612 <td>33</td>
613 </tr>
614 <tr>
615 <td>CCCCT</td>
616 <td>315</td>
617 <td>2.0823722</td>
618 <td>6.607268</td>
619 <td>12</td>
620 </tr>
621 <tr>
622 <td>CTCAG</td>
623 <td>420</td>
624 <td>2.0652719</td>
625 <td>6.149596</td>
626 <td>46</td>
627 </tr>
628 <tr>
629 <td>AGGGA</td>
630 <td>440</td>
631 <td>2.0589561</td>
632 <td>7.0225415</td>
633 <td>31</td>
634 </tr>
635 <tr>
636 <td>CAGAG</td>
637 <td>440</td>
638 <td>2.054374</td>
639 <td>5.8390937</td>
640 <td>38</td>
641 </tr>
642 <tr>
643 <td>AGCAG</td>
644 <td>440</td>
645 <td>2.0543735</td>
646 <td>10.499857</td>
647 <td>15</td>
648 </tr>
649 <tr>
650 <td>CCCTG</td>
651 <td>310</td>
652 <td>2.05389</td>
653 <td>6.622006</td>
654 <td>24</td>
655 </tr>
656 <tr>
657 <td>CTTCC</td>
658 <td>390</td>
659 <td>2.0197318</td>
660 <td>6.4701333</td>
661 <td>17</td>
662 </tr>
663 <tr>
664 <td>AGGAA</td>
665 <td>580</td>
666 <td>2.0098667</td>
667 <td>10.390455</td>
668 <td>18</td>
669 </tr>
670 <tr>
671 <td>AGAGC</td>
672 <td>430</td>
673 <td>2.0076835</td>
674 <td>10.499858</td>
675 <td>5</td>
676 </tr>
677 <tr>
678 <td>TCTCC</td>
679 <td>385</td>
680 <td>1.9938378</td>
681 <td>5.181288</td>
682 <td>29</td>
683 </tr>
684 <tr>
685 <td>TCCTC</td>
686 <td>385</td>
687 <td>1.9938378</td>
688 <td>5.181288</td>
689 <td>48</td>
690 </tr>
691 <tr>
692 <td>TCAGC</td>
693 <td>405</td>
694 <td>1.9915122</td>
695 <td>12.286894</td>
696 <td>44</td>
697 </tr>
698 <tr>
699 <td>TGCTG</td>
700 <td>380</td>
701 <td>1.9767327</td>
702 <td>6.5055346</td>
703 <td>47</td>
704 </tr>
705 <tr>
706 <td>CACCC</td>
707 <td>315</td>
708 <td>1.9728295</td>
709 <td>6.259694</td>
710 <td>9</td>
711 </tr>
712 <tr>
713 <td>TCCTG</td>
714 <td>380</td>
715 <td>1.9723336</td>
716 <td>6.4845653</td>
717 <td>8</td>
718 </tr>
719 <tr>
720 <td>CAGGG</td>
721 <td>310</td>
722 <td>1.954536</td>
723 <td>6.3016763</td>
724 <td>21</td>
725 </tr>
726 <tr>
727 <td>GATGG</td>
728 <td>395</td>
729 <td>1.9510134</td>
730 <td>6.1708827</td>
731 <td>1</td>
732 </tr>
733 <tr>
734 <td>TGGCT</td>
735 <td>375</td>
736 <td>1.9507233</td>
737 <td>9.098641</td>
738 <td>45</td>
739 </tr>
740 <tr>
741 <td>AAGAG</td>
742 <td>560</td>
743 <td>1.9405607</td>
744 <td>9.524584</td>
745 <td>4</td>
746 </tr>
747 <tr>
748 <td>TGTGG</td>
749 <td>370</td>
750 <td>1.929007</td>
751 <td>6.5200467</td>
752 <td>30</td>
753 </tr>
754 <tr>
755 <td>CTGAG</td>
756 <td>390</td>
757 <td>1.9220302</td>
758 <td>6.163313</td>
759 <td>35</td>
760 </tr>
761 <tr>
762 <td>CCTGT</td>
763 <td>370</td>
764 <td>1.9204301</td>
765 <td>6.4845653</td>
766 <td>6</td>
767 </tr>
768 <tr>
769 <td>CAGAA</td>
770 <td>555</td>
771 <td>1.9189543</td>
772 <td>6.0476103</td>
773 <td>6</td>
774 </tr>
775 <tr>
776 <td>TCCCT</td>
777 <td>370</td>
778 <td>1.9161558</td>
779 <td>6.4766097</td>
780 <td>33</td>
781 </tr>
782 <tr>
783 <td>CCCAC</td>
784 <td>305</td>
785 <td>1.9101999</td>
786 <td>6.259694</td>
787 <td>4</td>
788 </tr>
789 <tr>
790 <td>CACCA</td>
791 <td>405</td>
792 <td>1.8825499</td>
793 <td>6.9757566</td>
794 <td>33</td>
795 </tr>
796 <tr>
797 <td>AAAGA</td>
798 <td>730</td>
799 <td>1.8732982</td>
800 <td>5.1399345</td>
801 <td>42</td>
802 </tr>
803 <tr>
804 <td>CAGTG</td>
805 <td>380</td>
806 <td>1.8727474</td>
807 <td>6.163313</td>
808 <td>30</td>
809 </tr>
810 <tr>
811 <td>GAAGA</td>
812 <td>540</td>
813 <td>1.8712552</td>
814 <td>7.792842</td>
815 <td>26</td>
816 </tr>
817 <tr>
818 <td>TCTCT</td>
819 <td>460</td>
820 <td>1.8662432</td>
821 <td>5.068676</td>
822 <td>8</td>
823 </tr>
824 <tr>
825 <td>TTTCC</td>
826 <td>460</td>
827 <td>1.8662429</td>
828 <td>5.073749</td>
829 <td>38</td>
830 </tr>
831 <tr>
832 <td>GAGGC</td>
833 <td>295</td>
834 <td>1.8599615</td>
835 <td>6.301676</td>
836 <td>22</td>
837 </tr>
838 <tr>
839 <td>TCTGT</td>
840 <td>455</td>
841 <td>1.8500755</td>
842 <td>5.0850673</td>
843 <td>49</td>
844 </tr>
845 <tr>
846 <td>CCTGC</td>
847 <td>275</td>
848 <td>1.8219992</td>
849 <td>9.93301</td>
850 <td>6</td>
851 </tr>
852 <tr>
853 <td>CCTCT</td>
854 <td>350</td>
855 <td>1.8125799</td>
856 <td>7.7641597</td>
857 <td>2</td>
858 </tr>
859 <tr>
860 <td>TGCCT</td>
861 <td>345</td>
862 <td>1.7906713</td>
863 <td>5.187652</td>
864 <td>12</td>
865 </tr>
866 <tr>
867 <td>TTCCC</td>
868 <td>345</td>
869 <td>1.7866857</td>
870 <td>6.470133</td>
871 <td>18</td>
872 </tr>
873 <tr>
874 <td>GAGGG</td>
875 <td>280</td>
876 <td>1.769325</td>
877 <td>6.3283887</td>
878 <td>41</td>
879 </tr>
880 <tr>
881 <td>CACAC</td>
882 <td>380</td>
883 <td>1.7663432</td>
884 <td>5.813131</td>
885 <td>33</td>
886 </tr>
887 <tr>
888 <td>TCTGC</td>
889 <td>340</td>
890 <td>1.7647195</td>
891 <td>5.1980486</td>
892 <td>42</td>
893 </tr>
894 <tr>
895 <td>CTGGC</td>
896 <td>265</td>
897 <td>1.7596608</td>
898 <td>6.6434207</td>
899 <td>43</td>
900 </tr>
901 <tr>
902 <td>TTCAG</td>
903 <td>455</td>
904 <td>1.7527524</td>
905 <td>9.6255</td>
906 <td>12</td>
907 </tr>
908 <tr>
909 <td>AGCCA</td>
910 <td>375</td>
911 <td>1.74699</td>
912 <td>5.8319354</td>
913 <td>39</td>
914 </tr>
915 <tr>
916 <td>CTCTC</td>
917 <td>335</td>
918 <td>1.7348979</td>
919 <td>5.1761065</td>
920 <td>3</td>
921 </tr>
922 <tr>
923 <td>GGGTG</td>
924 <td>260</td>
925 <td>1.7341703</td>
926 <td>8.333022</td>
927 <td>28</td>
928 </tr>
929 <tr>
930 <td>TGGGG</td>
931 <td>260</td>
932 <td>1.7341703</td>
933 <td>8.349721</td>
934 <td>39</td>
935 </tr>
936 <tr>
937 <td>GTGGG</td>
938 <td>255</td>
939 <td>1.7008208</td>
940 <td>6.6730905</td>
941 <td>31</td>
942 </tr>
943 <tr>
944 <td>GGCCA</td>
945 <td>270</td>
946 <td>1.698549</td>
947 <td>6.293945</td>
948 <td>43</td>
949 </tr>
950 <tr>
951 <td>GCCCC</td>
952 <td>200</td>
953 <td>1.6914694</td>
954 <td>6.3460584</td>
955 <td>32</td>
956 </tr>
957 <tr>
958 <td>CTTTG</td>
959 <td>415</td>
960 <td>1.6874313</td>
961 <td>5.0799813</td>
962 <td>2</td>
963 </tr>
964 <tr>
965 <td>ACACA</td>
966 <td>485</td>
967 <td>1.6731915</td>
968 <td>5.1721287</td>
969 <td>14</td>
970 </tr>
971 <tr>
972 <td>GTGGT</td>
973 <td>320</td>
974 <td>1.6683302</td>
975 <td>5.216037</td>
976 <td>31</td>
977 </tr>
978 <tr>
979 <td>CTCAC</td>
980 <td>340</td>
981 <td>1.6681659</td>
982 <td>7.363092</td>
983 <td>31</td>
984 </tr>
985 <tr>
986 <td>TGCTT</td>
987 <td>410</td>
988 <td>1.6671008</td>
989 <td>5.090162</td>
990 <td>40</td>
991 </tr>
992 <tr>
993 <td>GGGGC</td>
994 <td>195</td>
995 <td>1.6602434</td>
996 <td>8.526694</td>
997 <td>40</td>
998 </tr>
999 <tr>
1000 <td>AGTGG</td>
1001 <td>335</td>
1002 <td>1.654657</td>
1003 <td>6.1708827</td>
1004 <td>3</td>
1005 </tr>
1006 <tr>
1007 <td>TTCTG</td>
1008 <td>405</td>
1009 <td>1.6467704</td>
1010 <td>5.0850663</td>
1011 <td>49</td>
1012 </tr>
1013 <tr>
1014 <td>AGAAG</td>
1015 <td>475</td>
1016 <td>1.6460115</td>
1017 <td>5.1952276</td>
1018 <td>22</td>
1019 </tr>
1020 <tr>
1021 <td>ACTCC</td>
1022 <td>335</td>
1023 <td>1.6436341</td>
1024 <td>6.1297736</td>
1025 <td>10</td>
1026 </tr>
1027 <tr>
1028 <td>GGCTC</td>
1029 <td>245</td>
1030 <td>1.6268562</td>
1031 <td>8.304275</td>
1032 <td>46</td>
1033 </tr>
1034 <tr>
1035 <td>TGGCA</td>
1036 <td>330</td>
1037 <td>1.6263331</td>
1038 <td>8.637284</td>
1039 <td>40</td>
1040 </tr>
1041 <tr>
1042 <td>TCCTT</td>
1043 <td>400</td>
1044 <td>1.6228201</td>
1045 <td>6.0946</td>
1046 <td>40</td>
1047 </tr>
1048 <tr>
1049 <td>TCTGG</td>
1050 <td>310</td>
1051 <td>1.612598</td>
1052 <td>5.204428</td>
1053 <td>43</td>
1054 </tr>
1055 <tr>
1056 <td>GGGGA</td>
1057 <td>255</td>
1058 <td>1.6113497</td>
1059 <td>6.3157325</td>
1060 <td>7</td>
1061 </tr>
1062 <tr>
1063 <td>CTGCT</td>
1064 <td>310</td>
1065 <td>1.609009</td>
1066 <td>6.4845653</td>
1067 <td>3</td>
1068 </tr>
1069 <tr>
1070 <td>CCCAA</td>
1071 <td>345</td>
1072 <td>1.6036536</td>
1073 <td>5.8073177</td>
1074 <td>10</td>
1075 </tr>
1076 <tr>
1077 <td>TGGCC</td>
1078 <td>240</td>
1079 <td>1.5936551</td>
1080 <td>6.6434207</td>
1081 <td>49</td>
1082 </tr>
1083 <tr>
1084 <td>GTGCT</td>
1085 <td>305</td>
1086 <td>1.5865883</td>
1087 <td>5.220104</td>
1088 <td>50</td>
1089 </tr>
1090 <tr>
1091 <td>GCTTT</td>
1092 <td>390</td>
1093 <td>1.5857788</td>
1094 <td>6.1081944</td>
1095 <td>41</td>
1096 </tr>
1097 <tr>
1098 <td>CCACA</td>
1099 <td>335</td>
1100 <td>1.5571709</td>
1101 <td>5.813131</td>
1102 <td>30</td>
1103 </tr>
1104 <tr>
1105 <td>CCTTC</td>
1106 <td>300</td>
1107 <td>1.5536399</td>
1108 <td>6.4701333</td>
1109 <td>17</td>
1110 </tr>
1111 <tr>
1112 <td>CCACT</td>
1113 <td>315</td>
1114 <td>1.5455065</td>
1115 <td>6.135909</td>
1116 <td>32</td>
1117 </tr>
1118 <tr>
1119 <td>TCTTC</td>
1120 <td>380</td>
1121 <td>1.5416791</td>
1122 <td>5.0737495</td>
1123 <td>49</td>
1124 </tr>
1125 <tr>
1126 <td>GTTCA</td>
1127 <td>400</td>
1128 <td>1.5408814</td>
1129 <td>7.700401</td>
1130 <td>11</td>
1131 </tr>
1132 <tr>
1133 <td>AGGCA</td>
1134 <td>330</td>
1135 <td>1.5407803</td>
1136 <td>5.8332543</td>
1137 <td>6</td>
1138 </tr>
1139 <tr>
1140 <td>AAAAG</td>
1141 <td>600</td>
1142 <td>1.5396972</td>
1143 <td>5.782427</td>
1144 <td>41</td>
1145 </tr>
1146 <tr>
1147 <td>GCACA</td>
1148 <td>330</td>
1149 <td>1.5373511</td>
1150 <td>5.8202715</td>
1151 <td>18</td>
1152 </tr>
1153 <tr>
1154 <td>ATGCC</td>
1155 <td>305</td>
1156 <td>1.4997808</td>
1157 <td>12.286893</td>
1158 <td>22</td>
1159 </tr>
1160 <tr>
1161 <td>GAAGG</td>
1162 <td>320</td>
1163 <td>1.4974226</td>
1164 <td>5.8462653</td>
1165 <td>8</td>
1166 </tr>
1167 <tr>
1168 <td>GAGAG</td>
1169 <td>320</td>
1170 <td>1.4974226</td>
1171 <td>5.857981</td>
1172 <td>41</td>
1173 </tr>
1174 <tr>
1175 <td>TGTGC</td>
1176 <td>285</td>
1177 <td>1.4825499</td>
1178 <td>5.2044287</td>
1179 <td>29</td>
1180 </tr>
1181 <tr>
1182 <td>TTGGC</td>
1183 <td>285</td>
1184 <td>1.4825495</td>
1185 <td>5.199223</td>
1186 <td>15</td>
1187 </tr>
1188 <tr>
1189 <td>GGGAT</td>
1190 <td>300</td>
1191 <td>1.4817826</td>
1192 <td>7.40506</td>
1193 <td>21</td>
1194 </tr>
1195 <tr>
1196 <td>AGCTG</td>
1197 <td>300</td>
1198 <td>1.4784846</td>
1199 <td>6.1633124</td>
1200 <td>30</td>
1201 </tr>
1202 <tr>
1203 <td>AACAG</td>
1204 <td>425</td>
1205 <td>1.4694693</td>
1206 <td>5.1836653</td>
1207 <td>10</td>
1208 </tr>
1209 <tr>
1210 <td>GAGTG</td>
1211 <td>295</td>
1212 <td>1.4570862</td>
1213 <td>6.1770606</td>
1214 <td>33</td>
1215 </tr>
1216 <tr>
1217 <td>GGGAC</td>
1218 <td>230</td>
1219 <td>1.4501395</td>
1220 <td>6.3143044</td>
1221 <td>40</td>
1222 </tr>
1223 <tr>
1224 <td>GTGTT</td>
1225 <td>355</td>
1226 <td>1.4466851</td>
1227 <td>6.134112</td>
1228 <td>50</td>
1229 </tr>
1230 <tr>
1231 <td>TTTGG</td>
1232 <td>355</td>
1233 <td>1.4466851</td>
1234 <td>6.1095753</td>
1235 <td>3</td>
1236 </tr>
1237 <tr>
1238 <td>TCTTT</td>
1239 <td>455</td>
1240 <td>1.4461157</td>
1241 <td>5.5590916</td>
1242 <td>1</td>
1243 </tr>
1244 <tr>
1245 <td>GAGAT</td>
1246 <td>395</td>
1247 <td>1.4447913</td>
1248 <td>6.397646</td>
1249 <td>27</td>
1250 </tr>
1251 <tr>
1252 <td>CAAAA</td>
1253 <td>560</td>
1254 <td>1.4338523</td>
1255 <td>5.123362</td>
1256 <td>31</td>
1257 </tr>
1258 <tr>
1259 <td>GGTTC</td>
1260 <td>275</td>
1261 <td>1.4305303</td>
1262 <td>10.398446</td>
1263 <td>10</td>
1264 </tr>
1265 <tr>
1266 <td>CCCTT</td>
1267 <td>275</td>
1268 <td>1.4241698</td>
1269 <td>5.186479</td>
1270 <td>39</td>
1271 </tr>
1272 <tr>
1273 <td>CTGTT</td>
1274 <td>350</td>
1275 <td>1.4231348</td>
1276 <td>5.0799813</td>
1277 <td>10</td>
1278 </tr>
1279 <tr>
1280 <td>ATGGT</td>
1281 <td>365</td>
1282 <td>1.4091904</td>
1283 <td>6.7596393</td>
1284 <td>47</td>
1285 </tr>
1286 <tr>
1287 <td>TGTTG</td>
1288 <td>345</td>
1289 <td>1.4059336</td>
1290 <td>5.1015162</td>
1291 <td>40</td>
1292 </tr>
1293 <tr>
1294 <td>CTGTC</td>
1295 <td>270</td>
1296 <td>1.4013947</td>
1297 <td>5.198048</td>
1298 <td>39</td>
1299 </tr>
1300 <tr>
1301 <td>GAGAC</td>
1302 <td>300</td>
1303 <td>1.4007094</td>
1304 <td>5.856681</td>
1305 <td>50</td>
1306 </tr>
1307 <tr>
1308 <td>CTTCT</td>
1309 <td>345</td>
1310 <td>1.3996824</td>
1311 <td>7.1246448</td>
1312 <td>50</td>
1313 </tr>
1314 <tr>
1315 <td>GGCCC</td>
1316 <td>165</td>
1317 <td>1.398575</td>
1318 <td>6.353853</td>
1319 <td>2</td>
1320 </tr>
1321 <tr>
1322 <td>TGAGT</td>
1323 <td>360</td>
1324 <td>1.3898867</td>
1325 <td>5.7939773</td>
1326 <td>32</td>
1327 </tr>
1328 <tr>
1329 <td>GGCAC</td>
1330 <td>220</td>
1331 <td>1.3840029</td>
1332 <td>6.2876506</td>
1333 <td>17</td>
1334 </tr>
1335 <tr>
1336 <td>CCTTT</td>
1337 <td>340</td>
1338 <td>1.3793972</td>
1339 <td>5.068676</td>
1340 <td>8</td>
1341 </tr>
1342 <tr>
1343 <td>CCTTG</td>
1344 <td>265</td>
1345 <td>1.3754432</td>
1346 <td>5.187652</td>
1347 <td>18</td>
1348 </tr>
1349 <tr>
1350 <td>TTGAA</td>
1351 <td>475</td>
1352 <td>1.3580486</td>
1353 <td>6.4295163</td>
1354 <td>7</td>
1355 </tr>
1356 <tr>
1357 <td>GAGCG</td>
1358 <td>215</td>
1359 <td>1.3555653</td>
1360 <td>12.603353</td>
1361 <td>6</td>
1362 </tr>
1363 <tr>
1364 <td>AAGGA</td>
1365 <td>390</td>
1366 <td>1.3514621</td>
1367 <td>5.1952276</td>
1368 <td>44</td>
1369 </tr>
1370 <tr>
1371 <td>TTCTT</td>
1372 <td>420</td>
1373 <td>1.3348758</td>
1374 <td>7.941558</td>
1375 <td>4</td>
1376 </tr>
1377 <tr>
1378 <td>GGGGT</td>
1379 <td>200</td>
1380 <td>1.3339773</td>
1381 <td>8.333022</td>
1382 <td>45</td>
1383 </tr>
1384 <tr>
1385 <td>CAGAT</td>
1386 <td>365</td>
1387 <td>1.3320893</td>
1388 <td>5.4769697</td>
1389 <td>34</td>
1390 </tr>
1391 <tr>
1392 <td>CTTGG</td>
1393 <td>255</td>
1394 <td>1.3264918</td>
1395 <td>5.1992235</td>
1396 <td>18</td>
1397 </tr>
1398 <tr>
1399 <td>TGGTT</td>
1400 <td>320</td>
1401 <td>1.3040541</td>
1402 <td>5.091313</td>
1403 <td>25</td>
1404 </tr>
1405 <tr>
1406 <td>TTGGG</td>
1407 <td>250</td>
1408 <td>1.3033829</td>
1409 <td>6.5135255</td>
1410 <td>6</td>
1411 </tr>
1412 <tr>
1413 <td>CTGGT</td>
1414 <td>250</td>
1415 <td>1.3004823</td>
1416 <td>5.204428</td>
1417 <td>48</td>
1418 </tr>
1419 <tr>
1420 <td>GCTCC</td>
1421 <td>195</td>
1422 <td>1.2919631</td>
1423 <td>8.277508</td>
1424 <td>26</td>
1425 </tr>
1426 <tr>
1427 <td>TGATG</td>
1428 <td>330</td>
1429 <td>1.2740628</td>
1430 <td>5.7939773</td>
1431 <td>46</td>
1432 </tr>
1433 <tr>
1434 <td>TGTCC</td>
1435 <td>245</td>
1436 <td>1.2716361</td>
1437 <td>5.187652</td>
1438 <td>21</td>
1439 </tr>
1440 <tr>
1441 <td>GGCTT</td>
1442 <td>240</td>
1443 <td>1.2484628</td>
1444 <td>5.199223</td>
1445 <td>4</td>
1446 </tr>
1447 <tr>
1448 <td>GACAG</td>
1449 <td>265</td>
1450 <td>1.2372932</td>
1451 <td>5.833254</td>
1452 <td>27</td>
1453 </tr>
1454 <tr>
1455 <td>GGTGT</td>
1456 <td>235</td>
1457 <td>1.2251799</td>
1458 <td>5.21082</td>
1459 <td>27</td>
1460 </tr>
1461 <tr>
1462 <td>AATGC</td>
1463 <td>335</td>
1464 <td>1.2226022</td>
1465 <td>10.031068</td>
1466 <td>21</td>
1467 </tr>
1468 <tr>
1469 <td>TTTGC</td>
1470 <td>300</td>
1471 <td>1.2198299</td>
1472 <td>5.0799813</td>
1473 <td>9</td>
1474 </tr>
1475 <tr>
1476 <td>GTCCT</td>
1477 <td>230</td>
1478 <td>1.1937809</td>
1479 <td>5.1928453</td>
1480 <td>47</td>
1481 </tr>
1482 <tr>
1483 <td>GGGCC</td>
1484 <td>140</td>
1485 <td>1.1893166</td>
1486 <td>6.3744006</td>
1487 <td>43</td>
1488 </tr>
1489 <tr>
1490 <td>ATCCC</td>
1491 <td>240</td>
1492 <td>1.1775287</td>
1493 <td>6.135909</td>
1494 <td>43</td>
1495 </tr>
1496 <tr>
1497 <td>GCTCT</td>
1498 <td>225</td>
1499 <td>1.1678292</td>
1500 <td>7.789268</td>
1501 <td>47</td>
1502 </tr>
1503 <tr>
1504 <td>AGCCC</td>
1505 <td>185</td>
1506 <td>1.1612303</td>
1507 <td>6.2799363</td>
1508 <td>31</td>
1509 </tr>
1510 <tr>
1511 <td>GATCG</td>
1512 <td>235</td>
1513 <td>1.1581463</td>
1514 <td>6.1633124</td>
1515 <td>29</td>
1516 </tr>
1517 <tr>
1518 <td>ACCCT</td>
1519 <td>230</td>
1520 <td>1.128465</td>
1521 <td>6.129773</td>
1522 <td>10</td>
1523 </tr>
1524 <tr>
1525 <td>GTTGG</td>
1526 <td>215</td>
1527 <td>1.1209095</td>
1528 <td>5.2160373</td>
1529 <td>47</td>
1530 </tr>
1531 <tr>
1532 <td>AGCTC</td>
1533 <td>225</td>
1534 <td>1.1063956</td>
1535 <td>6.1434464</td>
1536 <td>25</td>
1537 </tr>
1538 <tr>
1539 <td>CCCAT</td>
1540 <td>225</td>
1541 <td>1.1039332</td>
1542 <td>6.129773</td>
1543 <td>21</td>
1544 </tr>
1545 <tr>
1546 <td>CGGAA</td>
1547 <td>235</td>
1548 <td>1.0972222</td>
1549 <td>9.333206</td>
1550 <td>1</td>
1551 </tr>
1552 <tr>
1553 <td>TCTTG</td>
1554 <td>265</td>
1555 <td>1.0775164</td>
1556 <td>5.0799813</td>
1557 <td>21</td>
1558 </tr>
1559 <tr>
1560 <td>ATGCA</td>
1561 <td>295</td>
1562 <td>1.0766199</td>
1563 <td>5.4714913</td>
1564 <td>37</td>
1565 </tr>
1566 <tr>
1567 <td>GCTTG</td>
1568 <td>205</td>
1569 <td>1.0663953</td>
1570 <td>5.199223</td>
1571 <td>2</td>
1572 </tr>
1573 <tr>
1574 <td>AGCGG</td>
1575 <td>165</td>
1576 <td>1.0403174</td>
1577 <td>12.603352</td>
1578 <td>7</td>
1579 </tr>
1580 <tr>
1581 <td>TTGCC</td>
1582 <td>200</td>
1583 <td>1.0380702</td>
1584 <td>5.1876516</td>
1585 <td>3</td>
1586 </tr>
1587 <tr>
1588 <td>AACCT</td>
1589 <td>285</td>
1590 <td>1.0378094</td>
1591 <td>5.4593143</td>
1592 <td>13</td>
1593 </tr>
1594 <tr>
1595 <td>AACCA</td>
1596 <td>300</td>
1597 <td>1.0349638</td>
1598 <td>5.1721287</td>
1599 <td>22</td>
1600 </tr>
1601 <tr>
1602 <td>CCGAG</td>
1603 <td>160</td>
1604 <td>1.0065476</td>
1605 <td>12.575301</td>
1606 <td>25</td>
1607 </tr>
1608 <tr>
1609 <td>GTTCC</td>
1610 <td>190</td>
1611 <td>0.9861668</td>
1612 <td>6.4845653</td>
1613 <td>27</td>
1614 </tr>
1615 <tr>
1616 <td>ACTCA</td>
1617 <td>270</td>
1618 <td>0.983188</td>
1619 <td>5.4593153</td>
1620 <td>11</td>
1621 </tr>
1622 <tr>
1623 <td>CTCAT</td>
1624 <td>255</td>
1625 <td>0.9801258</td>
1626 <td>5.7624474</td>
1627 <td>4</td>
1628 </tr>
1629 <tr>
1630 <td>GAACC</td>
1631 <td>210</td>
1632 <td>0.9783144</td>
1633 <td>5.820272</td>
1634 <td>25</td>
1635 </tr>
1636 <tr>
1637 <td>GGCGG</td>
1638 <td>110</td>
1639 <td>0.93654746</td>
1640 <td>10.637051</td>
1641 <td>44</td>
1642 </tr>
1643 <tr>
1644 <td>GCGGG</td>
1645 <td>110</td>
1646 <td>0.93654746</td>
1647 <td>6.3886194</td>
1648 <td>36</td>
1649 </tr>
1650 <tr>
1651 <td>ATCGG</td>
1652 <td>190</td>
1653 <td>0.93637353</td>
1654 <td>6.163312</td>
1655 <td>30</td>
1656 </tr>
1657 <tr>
1658 <td>GTCTG</td>
1659 <td>180</td>
1660 <td>0.9363471</td>
1661 <td>5.2096424</td>
1662 <td>41</td>
1663 </tr>
1664 <tr>
1665 <td>GCGGT</td>
1666 <td>140</td>
1667 <td>0.93170583</td>
1668 <td>13.303162</td>
1669 <td>8</td>
1670 </tr>
1671 <tr>
1672 <td>CGGGG</td>
1673 <td>105</td>
1674 <td>0.8939771</td>
1675 <td>6.3886194</td>
1676 <td>46</td>
1677 </tr>
1678 <tr>
1679 <td>GGGCG</td>
1680 <td>105</td>
1681 <td>0.8939771</td>
1682 <td>8.518159</td>
1683 <td>43</td>
1684 </tr>
1685 <tr>
1686 <td>TCGGA</td>
1687 <td>170</td>
1688 <td>0.83780795</td>
1689 <td>7.395975</td>
1690 <td>31</td>
1691 </tr>
1692 <tr>
1693 <td>CTTGT</td>
1694 <td>205</td>
1695 <td>0.83355045</td>
1696 <td>5.0850673</td>
1697 <td>38</td>
1698 </tr>
1699 <tr>
1700 <td>TGCCG</td>
1701 <td>125</td>
1702 <td>0.83002883</td>
1703 <td>14.93275</td>
1704 <td>23</td>
1705 </tr>
1706 <tr>
1707 <td>AGGCG</td>
1708 <td>125</td>
1709 <td>0.7881193</td>
1710 <td>6.3016763</td>
1711 <td>15</td>
1712 </tr>
1713 <tr>
1714 <td>CGGTT</td>
1715 <td>150</td>
1716 <td>0.78028923</td>
1717 <td>10.398446</td>
1718 <td>9</td>
1719 </tr>
1720 <tr>
1721 <td>GTGAC</td>
1722 <td>150</td>
1723 <td>0.7392424</td>
1724 <td>6.163313</td>
1725 <td>32</td>
1726 </tr>
1727 <tr>
1728 <td>GCCGA</td>
1729 <td>115</td>
1730 <td>0.723456</td>
1731 <td>12.575301</td>
1732 <td>24</td>
1733 </tr>
1734 <tr>
1735 <td>CCCGC</td>
1736 <td>85</td>
1737 <td>0.7188745</td>
1738 <td>6.3460584</td>
1739 <td>30</td>
1740 </tr>
1741 <tr>
1742 <td>CCCCG</td>
1743 <td>85</td>
1744 <td>0.7188745</td>
1745 <td>10.576764</td>
1746 <td>29</td>
1747 </tr>
1748 <tr>
1749 <td>CGAGA</td>
1750 <td>135</td>
1751 <td>0.6303192</td>
1752 <td>9.333206</td>
1753 <td>26</td>
1754 </tr>
1755 <tr>
1756 <td>CGGGA</td>
1757 <td>90</td>
1758 <td>0.5674459</td>
1759 <td>6.301676</td>
1760 <td>24</td>
1761 </tr>
1762 <tr>
1763 <td>CACGG</td>
1764 <td>85</td>
1765 <td>0.5347284</td>
1766 <td>6.2876506</td>
1767 <td>37</td>
1768 </tr>
1769 <tr>
1770 <td>CGCCT</td>
1771 <td>80</td>
1772 <td>0.5300361</td>
1773 <td>6.6286345</td>
1774 <td>30</td>
1775 </tr>
1776 <tr>
1777 <td>CCGCA</td>
1778 <td>75</td>
1779 <td>0.47076905</td>
1780 <td>6.2799363</td>
1781 <td>36</td>
1782 </tr>
1783 <tr>
1784 <td>CGTTG</td>
1785 <td>40</td>
1786 <td>0.20807713</td>
1787 <td>5.2044277</td>
1788 <td>46</td>
1789 </tr>
1790 </table>
1791 </div>
1792 </body></html><div class="module"><h2>Files created by FastQC</h2><table cellspacing="2" cellpadding="2">
1793 <tr><td><a href="1000gsample_fastqc.zip">1000gsample_fastqc.zip (312.3 KB)</a></td></tr>
1794 <tr><td><a href="duplication_levels.png">duplication_levels.png (14.5 KB)</a></td></tr>
1795 <tr><td><a href="fastqc_data.txt">fastqc_data.txt (15.0 KB)</a></td></tr>
1796 <tr><td><a href="fastqc_report.html">fastqc_report.html (25.3 KB)</a></td></tr>
1797 <tr><td><a href="kmer_profiles.png">kmer_profiles.png (186.7 KB)</a></td></tr>
1798 <tr><td><a href="per_base_gc_content.png">per_base_gc_content.png (12.1 KB)</a></td></tr>
1799 <tr><td><a href="per_base_n_content.png">per_base_n_content.png (7.4 KB)</a></td></tr>
1800 <tr><td><a href="per_base_quality.png">per_base_quality.png (9.6 KB)</a></td></tr>
1801 <tr><td><a href="per_base_sequence_content.png">per_base_sequence_content.png (23.9 KB)</a></td></tr>
1802 <tr><td><a href="per_sequence_gc_content.png">per_sequence_gc_content.png (29.6 KB)</a></td></tr>
1803 <tr><td><a href="per_sequence_quality.png">per_sequence_quality.png (21.9 KB)</a></td></tr>
1804 <tr><td><a href="rgFastQCmsd1Ke.log">rgFastQCmsd1Ke.log (1.3 KB)</a></td></tr>
1805 <tr><td><a href="sequence_length_distribution.png">sequence_length_distribution.png (18.8 KB)</a></td></tr>
1806 <tr><td><a href="summary.txt">summary.txt (509 B)</a></td></tr>
1807 </table>
1808 <a href="http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/">FastQC documentation and full attribution is here</a><br/><hr/>
1809 FastQC was run by Galaxy using the rgenetics rgFastQC wrapper - see http://rgenetics.org for details and licensing
1810 </div></div><div class="footer">Produced by <a href="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/">FastQC</a> (version 0.10.1)</div>