diff featurecounts.xml @ 20:1759d845181e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/featurecounts commit c8c08f052bdffcbfd14eebd760af923486bcf8c5

--- a/featurecounts.xml	Wed Jul 18 13:29:17 2018 -0400
+++ b/featurecounts.xml	Tue Sep 25 04:28:33 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="featurecounts" name="featureCounts" version="1.6.2" profile="16.04">
+<tool id="featurecounts" name="featureCounts" version="1.6.3" profile="16.04">
     <description>Measure gene expression in RNA-Seq experiments from SAM or BAM files.</description>
     <requirements>
         <requirement type="package" version="1.6.2">subread</requirement>
@@ -414,7 +414,7 @@
     <outputs>
         <data format="tabular"
               name="output_medium"
-              label="${tool.name} on ${on_string}">
+              label="${tool.name} on ${on_string}: Counts (with length)">
             <filter>format == "tabdel_medium"</filter>
             <actions>
                 <action name="column_names" type="metadata" default="Geneid,${alignment.element_identifier},Length" />
@@ -429,7 +429,7 @@
 
         <data format="tabular"
               name="output_short"
-              label="${tool.name} on ${on_string}">
+              label="${tool.name} on ${on_string}: Counts">
             <filter>format == "tabdel_short"</filter>
             <actions>
                 <action name="column_names" type="metadata" default="Geneid,${alignment.element_identifier}" />
@@ -438,7 +438,7 @@
 
         <data format="tabular"
               name="output_full"
-              label="${tool.name} on ${on_string}: count table">
+              label="${tool.name} on ${on_string}: Counts (with location)">
             <filter>format == "tabdel_full"</filter>
             <actions>
                 <action name="column_names" type="metadata" default="Geneid,Chr,Start,End,Strand,Length,${alignment.element_identifier}" />
@@ -447,7 +447,7 @@
 
         <data format="tabular"
               name="output_summary"
-              label="${tool.name} on ${on_string}: summary">
+              label="${tool.name} on ${on_string}: Summary">
             <actions>
                 <action name="column_names" type="metadata" default="Status,${alignment.element_identifier}" />
             </actions>
@@ -455,7 +455,7 @@
 
         <data format="tabular"
               name="output_feature_lengths"
-              label="${tool.name} on ${on_string}: feature lengths">
+              label="${tool.name} on ${on_string}: Feature lengths">
             <filter>include_feature_length_file</filter>
             <actions>
                 <action name="column_names" type="metadata" default="Feature,Length" />
@@ -463,7 +463,7 @@
         </data>
 
         <data name="output_jcounts" format="tabular"
-              label="${tool.name} on ${on_string}: junction counts">
+              label="${tool.name} on ${on_string}: Junction counts">
             <filter>extended_parameters['exon_exon_junction_read_counting_enabled']['count_exon_exon_junction_reads']</filter>
             <actions>
                 <action name="column_names" type="metadata"