Mercurial > repos > iuc > featurecounts
changeset 12:b714f4620411 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/featurecounts commit 5c013729eeb48f723f7d436c4ded998c8d9291eb
| author | iuc |
|---|---|
| date | Mon, 07 May 2018 06:21:58 -0400 |
| parents | e803ca6407c0 |
| children | 386220cf6877 |
| files | featurecounts.xml |
| diffstat | 1 files changed, 2 insertions(+), 7 deletions(-) [+] |
line wrap: on
line diff
--- a/featurecounts.xml Fri Mar 16 14:05:55 2018 -0400 +++ b/featurecounts.xml Mon May 07 06:21:58 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="featurecounts" name="featureCounts" version="1.6.0.3" profile="16.04"> +<tool id="featurecounts" name="featureCounts" version="1.6.0.4" profile="16.04"> <description>Measure gene expression in RNA-Seq experiments from SAM or BAM files.</description> <requirements> <requirement type="package" version="1.6.0">subread</requirement> @@ -132,8 +132,7 @@ multiple="false" format="bam,sam" label="Alignment file" - help="The input alignment file(s) where the gene expression has to be counted. The file can have a SAM or BAM format; but ALL files must be in the same format. These files must have the database/genome attribute already specified e.g. hg38, not the default: ?" > - <validator type="unspecified_build"/> + help="The input alignment file(s) where the gene expression has to be counted. The file can have a SAM or BAM format; but ALL files must be in the same format. Unless you are using a Gene annotation file from the History, these files must have the database/genome attribute already specified e.g. hg38, not the default: ?" > </param> <conditional name="anno"> @@ -163,10 +162,6 @@ type="data" label="Gene annotation file" help="The program assumes that the provided annotation file is in GTF format. Make sure that the gene annotation file corresponds to the same reference genome as used for the alignment"> - <options> - <filter type="data_meta" key="dbkey" ref="alignment"/> - </options> - <validator type="no_options" message="The current history does not include a dataset with the build associated with the selected input file"/> </param> </when> </conditional>