comparison feelnc_wrapper.xml @ 4:67af24676bd6 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/feelnc commit 8913264abbcee238b5ef81268d111db98c942bfe"

3:095162ba8e90

<?xml version="1.0" encoding="utf-8"?>
<tool id="feelnc" name="FEELnc" profile="17.01" version="0.2">
    <description>FlExible Extraction of LncRNA</description>
    <requirements>
        <requirement type="package" version="0.2">feelnc</requirement>
    </requirements>
    <command detect_errors="aggressive"><![CDATA[
export FEELNCPATH=\$(dirname \$(command -v FEELnc_pipeline.sh))/../ &&

FEELnc_pipeline.sh
--candidate='${candidate}'
--reference='${reference}'
--genome='${genome}'
--outname='candidate_lncRNA'
--outdir='out_feelnc'

&&

4:67af24676bd6

<?xml version="1.0" encoding="utf-8"?>
<tool id="feelnc" name="FEELnc" profile="17.01" version="0.2">
    <description>FlExible Extraction of LncRNA</description>
    <xrefs>
        <xref type="bio.tools">feelnc</xref>
    </xrefs>
    <requirements>
        <requirement type="package" version="0.2">feelnc</requirement>
    </requirements>
    <command detect_errors="aggressive"><![CDATA[
export FEELNCPATH=\$(dirname \$(command -v FEELnc_pipeline.sh))/../ &&
## Symlink the genome FASTA to the working directory to avoid writing .index to inputdir
ln -s '$genome' genome_fa &&
FEELnc_pipeline.sh
--candidate='${candidate}'
--reference='${reference}'
--genome=genome_fa
--outname='candidate_lncRNA'
--outdir='out_feelnc'

&&