Mercurial > repos > iuc > feelnc

comparison feelnc_wrapper.xml @ 2:75427ceb32d1 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/feelnc commit c39323361ef6ba2664646e4476736c80bcd01124"
author iuc
date Wed, 18 Dec 2019 15:24:23 -0500
parents 17a77824c8e4
children 095162ba8e90
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1:17a77824c8e4 2:75427ceb32d1
3 <description>FlExible Extraction of LncRNA</description> 3 <description>FlExible Extraction of LncRNA</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="0.1.1">feelnc</requirement> 5 <requirement type="package" version="0.1.1">feelnc</requirement>
6 </requirements> 6 </requirements>
7 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
8 export FEELNCPATH=\$(dirname \$(command -v FEELnc_pipeline.sh))/../ &&
9
8 FEELnc_pipeline.sh 10 FEELnc_pipeline.sh
9 --candidate='${transcripts}' 11 --candidate='${transcripts}'
10 --reference='${annotation}' 12 --reference='${annotation}'
11 --genome='${genome}' 13 --genome='${genome}'
12 --outname='candidate_lncRNA' 14 --outname='candidate_lncRNA'