Mercurial > repos > iuc > fermikit_variants

view test-data/sv.vcf @ 0:44519e762f16 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fermikit commit 16dcfc0fb84fad80fcf18417ae46c5499c96147a
author iuc
date Thu, 05 Jan 2017 08:35:48 -0500
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##fileformat=VCFv4.1
##source=htsbox-abreak-r327
##reference=/tmp/tmpIcvwsb/files/000/dataset_2.dat
##contig=<ID=11_1910000_1940000,length=30001>
##ALT=<ID=DEL,Description="Deletion">
##ALT=<ID=INS,Description="Insertion">
##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="SV length">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=END,Number=1,Type=Integer,Description="End coordinate of this variant">
##INFO=<ID=QGAP,Number=1,Type=Integer,Description="Length of gap on the query sequence">
##INFO=<ID=MINMAPQ,Number=1,Type=Integer,Description="Min flanking mapping quality">
##INFO=<ID=MINSC,Number=1,Type=Integer,Description="Min flanking alignment score">
##INFO=<ID=MINTIPQ,Number=1,Type=Integer,Description="Min quality/depth flanking the break point">
##FILTER=<ID=LowSupp,Description="MINTIPQ < 10">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
11_1910000_1940000	5276	.	C	<DEL>	30	.	SVTYPE=DEL;END=26956;SVLEN=21678;QGAP=3;MINMAPQ=60;MINSC=793;MINTIPQ=23