Mercurial > repos > iuc > filter_tabular
comparison filter_tabular.xml @ 15:90f657745fea draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
author | iuc |
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date | Thu, 27 Jun 2024 17:23:47 +0000 |
parents | 4d5aae46f850 |
children |
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14:557ec8d7087d | 15:90f657745fea |
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1 <tool id="filter_tabular" name="Filter Tabular" version="3.3.0"> | 1 <tool id="filter_tabular" name="Filter Tabular" version="3.3.1"> |
2 <description></description> | 2 <description></description> |
3 | 3 |
4 <macros> | 4 <macros> |
5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
6 </macros> | 6 </macros> |
14 ]]></command> | 14 ]]></command> |
15 <configfiles> | 15 <configfiles> |
16 <configfile name="filter_json"> | 16 <configfile name="filter_json"> |
17 #import json | 17 #import json |
18 #set $dataset_name = $input.element_identifier | 18 #set $dataset_name = $input.element_identifier |
19 #set $table=$input | |
19 @LINEFILTERS@ | 20 @LINEFILTERS@ |
20 #if $input_filters: | |
21 #echo $json.dumps($input_filters) | 21 #echo $json.dumps($input_filters) |
22 #end if | |
23 </configfile> | 22 </configfile> |
24 </configfiles> | 23 </configfiles> |
25 <inputs> | 24 <inputs> |
26 <param name="input" type="data" format="tabular" label="Tabular Dataset to filter"/> | 25 <param name="input" type="data" format="tabular" label="Tabular Dataset to filter"/> |
27 <param name="comment_char" type="boolean" truevalue="--comment_char '#'" falsevalue="" checked="true" label="exclude lines starting with #"/> | 26 <param name="comment_char" type="boolean" truevalue="--comment_char '#'" falsevalue="" checked="true" label="exclude lines starting with #"/> |
164 <param name="filter_type" value="append_dataset_name"/> | 163 <param name="filter_type" value="append_dataset_name"/> |
165 </conditional> | 164 </conditional> |
166 </repeat> | 165 </repeat> |
167 <output name="output" file="filtered_IEDB.tsv"/> | 166 <output name="output" file="filtered_IEDB.tsv"/> |
168 </test> | 167 </test> |
168 <test> | |
169 <param name="input" ftype="tabular" value="math_input.tsv"/> | |
170 <param name="comment_char" value="False"/> | |
171 <repeat name="linefilters"> | |
172 <conditional name="filter"> | |
173 <param name="filter_type" value="skip"/> | |
174 <param name="skiplines" value=""/> | |
175 </conditional> | |
176 </repeat> | |
177 <output name="output" file="math_input.tsv"/> | |
178 </test> | |
169 </tests> | 179 </tests> |
170 <help><![CDATA[ | 180 <help><![CDATA[ |
171 ============== | 181 ============== |
172 Filter Tabular | 182 Filter Tabular |
173 ============== | 183 ============== |