# HG changeset patch # User iuc # Date 1579782981 18000 # Node ID 59278960a2e727b0892bfa6d1f0a591c4d4a59ad # Parent 34d29339abab4f5b26d66c131aa05061058d7f1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 1647065a8e6e8d8c98cd0d2194b695fb9425f541" diff -r 34d29339abab -r 59278960a2e7 filter_tabular.xml --- a/filter_tabular.xml Tue Oct 30 20:18:57 2018 -0400 +++ b/filter_tabular.xml Thu Jan 23 07:36:21 2020 -0500 @@ -1,12 +1,10 @@ - + macros.xml - - - + + + + python + + diff -r 34d29339abab -r 59278960a2e7 test-data/psm_dbmod_output.tsv --- a/test-data/psm_dbmod_output.tsv Tue Oct 30 20:18:57 2018 -0400 +++ b/test-data/psm_dbmod_output.tsv Thu Jan 23 07:36:21 2020 -0500 @@ -1,5 +1,5 @@ -#scan m/z Precursor m/z Error Sequence Protein(s) confidence -1 523.272583 -4.42404529799 PYANQPTVR NP_116558 99.999 -3 652.843567 4.02947892238 SSWAGLQFPVGR NP_066544_R21W 99.999 -4 788.87384 1.27277118312 AQACNLDQSGTNVAK NP_112092_rs7285167:R182C 99.999 -7 908.008545 0.740229025429 DMTVPVLVSKPPVFTGK NP_001909_rs72973763:I239V,rs12021720:S384G 94.7368421053 +#scan m\/z Precursor m\/z Error Sequence Protein\(s\) confidence +1 523.27\d* -4.42\d* PYANQPTVR NP_116558 99.9\d* +3 652.84\d* 4.02\d* SSWAGLQFPVGR NP_066544_R21W 99.9\d* +4 788.87\d* 1.27\d* AQACNLDQSGTNVAK NP_112092_rs7285167:R182C 99.9\d* +7 908.00\d* 0.74\d* DMTVPVLVSKPPVFTGK NP_001909_rs72973763:I239V,rs12021720:S384G 94.73\d* diff -r 34d29339abab -r 59278960a2e7 test-data/psm_dbmod_output1.tsv --- a/test-data/psm_dbmod_output1.tsv Tue Oct 30 20:18:57 2018 -0400 +++ b/test-data/psm_dbmod_output1.tsv Thu Jan 23 07:36:21 2020 -0500 @@ -1,6 +1,6 @@ -scan Sequence Protein(s) Position m/z Precursor m/z Error confidence -1 PYANQPTVR NP_116558 2 523.272583 -4.42404529799 99.999 -3 SSWAGLQFPVGR NP_066544_R21W 19 652.843567 4.02947892238 99.999 -4 AQACNLDQSGTNVAK NP_112092_rs7285167:R182C 179 788.87384 1.27277118312 99.999 -6 LQLLPESFICK NP_001028196, NP_001244919, NP_036311 198; 163; 277 674.370911 0.341203679555 99.3865030675 -8 FGVSSESKPEEVK NP_001265138, NP_001265138_rs2274136:A858T,F879L, NP_001265139, NP_001265139_rs2274136:A785T,F806L, NP_005115, NP_005115_rs2274136:A827T,F848L 992; 992; 919; 919; 961; 961 711.858643 -0.766605567436 99.999 +scan Sequence Protein\(s\) Position m\/z Precursor m\/z Error confidence +1 PYANQPTVR NP_116558 2 523.27\d* -4.42\d* 99.99\d* +3 SSWAGLQFPVGR NP_066544_R21W 19 652.84\d* 4.02\d* 99.99\d* +4 AQACNLDQSGTNVAK NP_112092_rs7285167:R182C 179 788.87\d* 1.27\d* 99.99\d* +6 LQLLPESFICK NP_001028196, NP_001244919, NP_036311 198; 163; 277 674.37\d* 0.34\d* 99.38\d* +8 FGVSSESKPEEVK NP_001265138, NP_001265138_rs2274136:A858T,F879L, NP_001265139, NP_001265139_rs2274136:A785T,F806L, NP_005115, NP_005115_rs2274136:A827T,F848L 992; 992; 919; 919; 961; 961 711.85\d* -0.76\d* 99.9\d* diff -r 34d29339abab -r 59278960a2e7 test-data/psm_report_out1.tsv --- a/test-data/psm_report_out1.tsv Tue Oct 30 20:18:57 2018 -0400 +++ b/test-data/psm_report_out1.tsv Thu Jan 23 07:36:21 2020 -0500 @@ -1,9 +1,9 @@ -Scan Sequence Protein(s) Position m/z Precursor m/z Error -1 PYANQPTVR NP_116558 2 523.272583 -4.42404529799 -2 DANTQVHTLR NP_443137, NP_443137_S1016F 443; 443 577.799622 0.611733835535 -3 SSWAGLQFPVGR NP_066544_R21W 19 652.843567 4.02947892238 -4 AQACNLDQSGTNVAK NP_112092_rs7285167:R182C 179 788.87384 1.27277118312 -5 ACNDPFIQK NP_001273432_F75C, NP_001273433_F77C, NP_001273434_F77C, NP_006635_F75C 74; 76; 76; 74 546.760803 0.0670946694617 -6 LQLLPESFICK NP_001028196, NP_001244919, NP_036311 198; 163; 277 674.370911 0.341203679555 -7 DMTVPVLVSKPPVFTGK NP_001909_rs72973763:I239V,rs12021720:S384G 234 908.008545 0.740229025429 -8 FGVSSESKPEEVK NP_001265138, NP_001265138_rs2274136:A858T,F879L, NP_001265139, NP_001265139_rs2274136:A785T,F806L, NP_005115, NP_005115_rs2274136:A827T,F848L 992; 992; 919; 919; 961; 961 711.858643 -0.766605567436 +Scan Sequence Protein\(s\) Position m\/z Precursor m\/z Error +1 PYANQPTVR NP_116558 2 523.272583 -4.42\d* +2 DANTQVHTLR NP_443137, NP_443137_S1016F 443; 443 577.799622 0.61\d* +3 SSWAGLQFPVGR NP_066544_R21W 19 652.843567 4.02\d* +4 AQACNLDQSGTNVAK NP_112092_rs7285167:R182C 179 788.87384 1.27\d* +5 ACNDPFIQK NP_001273432_F75C, NP_001273433_F77C, NP_001273434_F77C, NP_006635_F75C 74; 76; 76; 74 546.760803 0.067\d* +6 LQLLPESFICK NP_001028196, NP_001244919, NP_036311 198; 163; 277 674.370911 0.34\d* +7 DMTVPVLVSKPPVFTGK NP_001909_rs72973763:I239V,rs12021720:S384G 234 908.008545 0.74\d* +8 FGVSSESKPEEVK NP_001265138, NP_001265138_rs2274136:A858T,F879L, NP_001265139, NP_001265139_rs2274136:A785T,F806L, NP_005115, NP_005115_rs2274136:A827T,F848L 992; 992; 919; 919; 961; 961 711.858643 -0.76\d* diff -r 34d29339abab -r 59278960a2e7 test-data/psm_report_out2.tsv --- a/test-data/psm_report_out2.tsv Tue Oct 30 20:18:57 2018 -0400 +++ b/test-data/psm_report_out2.tsv Thu Jan 23 07:36:21 2020 -0500 @@ -1,5 +1,5 @@ -Scan m/z Precursor m/z Error Sequence Protein(s) -1 523.272583 -4.42404529799 PYANQPTVR NP_116558 -3 652.843567 4.02947892238 SSWAGLQFPVGR NP_066544_R21W -4 788.87384 1.27277118312 AQACNLDQSGTNVAK NP_112092_rs7285167:R182C -7 908.008545 0.740229025429 DMTVPVLVSKPPVFTGK NP_001909_rs72973763:I239V,rs12021720:S384G +Scan m\/z Precursor m\/z Error Sequence Protein\(s\) +1 523.27\d* -4.42\d* PYANQPTVR NP_116558 +3 652.84\d* 4.02\d* SSWAGLQFPVGR NP_066544_R21W +4 788.87\d* 1.27\d* AQACNLDQSGTNVAK NP_112092_rs7285167:R182C +7 908.00\d* 0.74\d* DMTVPVLVSKPPVFTGK NP_001909_rs72973763:I239V,rs12021720:S384G