# HG changeset patch
# User iuc
# Date 1600946858 0
# Node ID 9cc411a62277b84b56657ed5f6bd785c723cc049
# Parent  69b08fc9557c147742cc53715ab1236844a9ff3a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 67db58361546009a77b2cbd140967fbc634d425b"

diff -r 69b08fc9557c -r 9cc411a62277 load_db.py
--- a/load_db.py	Sat Sep 12 01:21:45 2020 +0000
+++ b/load_db.py	Thu Sep 24 11:27:38 2020 +0000
@@ -189,6 +189,9 @@
             if linenum == 0 and firstlinenames:
                 col_names = [get_valid_column_name(name) or 'c%d' % (i + 1)
                              for i, name in enumerate(fields)]
+                # guarantee col_types in case of empty data
+                while len(col_types) < len(fields):
+                    col_types.append(None)
                 continue
             if linenum > max_lines:
                 break
@@ -210,23 +213,30 @@
     if not col_names:
         col_names = ['c%d' % i for i in range(1, len(col_types) + 1)]
     if column_names:
+        cnames = [cn.strip() for cn in column_names.split(',')]
         if load_named_columns:
             col_idx = []
-            cnames = []
-            for i, cname in enumerate(
-                    [cn.strip() for cn in column_names.split(',')]):
+            colnames = []
+            for i, cname in enumerate(cnames):
+                # guarantee col_types in case of empty data
+                if i >= len(col_types):
+                    col_types.append('TEXT')
                 if cname != '':
                     col_idx.append(i)
-                    cnames.append(cname)
+                    colnames.append(cname)
             col_types = [col_types[i] for i in col_idx]
-            col_names = cnames
+            col_names = colnames
         else:
-            for i, cname in enumerate(
-                    [cn.strip() for cn in column_names.split(',')]):
-                if cname and i < len(col_names):
-                    col_names[i] = cname
+            if col_names:
+                for i, cname in enumerate(cnames):
+                    if cname and i < len(col_names):
+                        col_names[i] = cname
+            else:
+                col_names = [x if x else 'c%d' % (i) for i, x in enumerate(cnames)]
     col_def = []
     for i, col_name in enumerate(col_names):
+        if i >= len(col_types):
+            col_types.append('TEXT')
         col_def.append('%s %s' % (col_names[i], col_types[i]))
     return col_names, col_types, col_def, col_idx
 
diff -r 69b08fc9557c -r 9cc411a62277 test-data/netMHC_summary_out1.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/netMHC_summary_out1.tsv	Thu Sep 24 11:27:38 2020 +0000
@@ -0,0 +1,1 @@
+#pos	peptide	logscore	affinity(nM)	Bind Level	Protein Name	Allele
diff -r 69b08fc9557c -r 9cc411a62277 test-data/netMHC_summary_out2.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/netMHC_summary_out2.tsv	Thu Sep 24 11:27:38 2020 +0000
@@ -0,0 +1,1 @@
+pos	peptide	logscore	Allele