Mercurial > repos > iuc > flair_collapse
comparison flair_collapse.xml @ 1:03b7b7811ea6 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flair commit 41f4293e4db957a23f3be9ff76874a8619e803a2"
author | iuc |
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date | Fri, 09 Apr 2021 21:15:09 +0000 |
parents | 57dc46adf2da |
children | 1fdcbfcca71c |
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0:57dc46adf2da | 1:03b7b7811ea6 |
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1 <tool id="flair_collapse" name="FLAIR collapse" version="@TOOL_VERSION@" profile="20.01"> | 1 <tool id="flair_collapse" name="FLAIR collapse" version="@TOOL_VERSION@+galaxy0" profile="20.01"> |
2 <description>defines high-confidence isoforms from flair-corrected reads</description> | 2 <description>defines high-confidence isoforms from flair-corrected reads</description> |
3 | 3 |
4 <macros> | 4 <macros> |
5 <import>flair_macros.xml</import> | 5 <import>flair_macros.xml</import> |
6 </macros> | 6 </macros> |
54 ######### | 54 ######### |
55 | 55 |
56 ]]></command> | 56 ]]></command> |
57 <inputs> | 57 <inputs> |
58 <param name="input_query" argument="-q" type="data" format="bed" label="Corrected Reads as BED file"/> | 58 <param name="input_query" argument="-q" type="data" format="bed" label="Corrected Reads as BED file"/> |
59 <param name="input_reads" argument="-r" type="data" format="fasta,fastq" label="FASTA/FASTQ file of raw reads"/> | 59 <param name="input_reads" argument="-r" type="data" format="fasta,fasta.gz,fastq,fastq.gz" label="FASTA/FASTQ file of raw reads"/> |
60 <expand macro="reference_interface" /> | 60 <expand macro="reference_interface" /> |
61 <param name="input_gtf" argument="-f" type="data" format="gtf" label="GTF annotation file"/> | 61 <param name="input_gtf" argument="-f" type="data" format="gtf" label="GTF annotation file"/> |
62 <param name="input_promotors" optional="true" argument="-p" type="data" format="bed" label="Promotor BED file to identify full-length reads" /> | 62 <param name="input_promotors" optional="true" argument="-p" type="data" format="bed" label="Promotor BED file to identify full-length reads" /> |
63 | 63 |
64 <!-- Additional Options --> | 64 <!-- Additional Options --> |