Mercurial > repos > iuc > freyja_aggregate_plot
changeset 3:54acd5139cab draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/freyja commit 79a21a9a4a63e538f2ba0bc29384593df2c65859
| author | iuc |
|---|---|
| date | Fri, 15 Nov 2024 16:44:42 +0000 |
| parents | 948903a8555d |
| children | 640c0b8cc8bf |
| files | macros.xml |
| diffstat | 1 files changed, 13 insertions(+), 1 deletions(-) [+] |
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--- a/macros.xml Thu Oct 10 18:28:32 2024 +0000 +++ b/macros.xml Fri Nov 15 16:44:42 2024 +0000 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <macros> - <token name="@TOOL_VERSION@">1.5.1</token> + <token name="@TOOL_VERSION@">1.5.2</token> <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">21.01</token> <xml name="biotools"> @@ -39,6 +39,7 @@ --meta '${meta}' #end if $confirmedonly +--pathogen '$pathogen' ]]></token> <token name="@CUSTOM_BARCODES_COMMAND@"><![CDATA[ #if $usher_update_option.choice == 'custom' @@ -138,6 +139,17 @@ checked="false" label="Use larger library with non-public lineages" help="Allows to use larger UShER barcodes library extended with GISAID non-public lineages"/> + <param argument="--pathogen" type="select" label="Pathogen of interest"> + <option value="SARS-CoV-2" selected="true">SARS-CoV-2</option> + <option value="MPXV" selected="true">MPXV</option> + <option value="H5NX" selected="true">H5NX</option> + <option value="H1N1pdm" selected="true">H1N1pdm</option> + <option value="FLU-B-VIC" selected="true">FLU-B-VIC</option> + <option value="MEASLESN450" selected="true">MEASLESN450</option> + <option value="MEASLES" selected="true">MEASLES</option> + <option value="RSVa" selected="true">RSVa</option> + <option value="RSVb" selected="true">RSVb</option> + </param> </xml> <xml name="plot_lineages"> <param argument="--lineages" type="boolean" truevalue="--lineages" falsevalue=""