Mercurial > repos > iuc > funannotate_annotate
comparison funannotate_annotate.xml @ 6:582fd74dc2a1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 2c4f8172c3f452e1119b3d528c97da382750adeb
| author | iuc |
|---|---|
| date | Tue, 25 Apr 2023 18:29:19 +0000 |
| parents | 14f588312c56 |
| children | b6b5cd37f2a2 |
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| 5:9feee7fc49a1 | 6:582fd74dc2a1 |
|---|---|
| 6 <requirements> | 6 <requirements> |
| 7 <expand macro="requirements" /> | 7 <expand macro="requirements" /> |
| 8 </requirements> | 8 </requirements> |
| 9 <version_command>funannotate check --show-versions</version_command> | 9 <version_command>funannotate check --show-versions</version_command> |
| 10 <command><![CDATA[ | 10 <command><![CDATA[ |
| 11 ## Needed by some subprocess invoked internally | |
| 12 ## https://github.com/nextgenusfs/funannotate/issues/905 | |
| 13 export FUNANNOTATE_DB='$database.fields.path' | |
| 14 | |
| 15 && | |
| 16 | |
| 11 funannotate annotate | 17 funannotate annotate |
| 12 | 18 |
| 13 #if $input.input_type == 'gbk' | 19 #if $input.input_type == 'gbk' |
| 14 --genbank '${input.genbank}' | 20 --genbank '${input.genbank}' |
| 15 #else | 21 #else |