Mercurial > repos > iuc > funannotate_annotate

view test-data/predict_augustus/Genus_species.tbl @ 5:9feee7fc49a1 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 2589d2785ca90160a22a5fe14e03311e189ea51d
author iuc
date Thu, 13 Apr 2023 17:13:04 +0000
parents a5baa4ff168d
children
line wrap: on
line source

>Feature sample
1	215740	REFERENCE
			CFMR	12345
1466	1092	gene
			locus_tag	FUN_000001
1466	1092	mRNA
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000001-T1_mrna
			protein_id	gnl|ncbi|FUN_000001-T1
1466	1092	CDS
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000001-T1_mrna
			protein_id	gnl|ncbi|FUN_000001-T1
2126	3863	gene
			locus_tag	FUN_000002
2126	2199	mRNA
2258	3224
3284	3490
3549	3863
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000002-T1_mrna
			protein_id	gnl|ncbi|FUN_000002-T1
2126	2199	CDS
2258	3224
3284	3490
3549	3863
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000002-T1_mrna
			protein_id	gnl|ncbi|FUN_000002-T1
5802	4883	gene
			locus_tag	FUN_000003
5802	5797	mRNA
5539	4883
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000003-T1_mrna
			protein_id	gnl|ncbi|FUN_000003-T1
5802	5797	CDS
5539	4883
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000003-T1_mrna
			protein_id	gnl|ncbi|FUN_000003-T1
10557	8696	gene
			locus_tag	FUN_000004
10557	10549	mRNA
10462	8696
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000004-T1_mrna
			protein_id	gnl|ncbi|FUN_000004-T1
10557	10549	CDS
10462	8696
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000004-T1_mrna
			protein_id	gnl|ncbi|FUN_000004-T1
15214	14247	gene
			locus_tag	FUN_000005
15214	15209	mRNA
14648	14247
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000005-T1_mrna
			protein_id	gnl|ncbi|FUN_000005-T1
15214	15209	CDS
14648	14247
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000005-T1_mrna
			protein_id	gnl|ncbi|FUN_000005-T1
21705	19533	gene
			locus_tag	FUN_000006
21705	21700	mRNA
21515	19533
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000006-T1_mrna
			protein_id	gnl|ncbi|FUN_000006-T1
21705	21700	CDS
21515	19533
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000006-T1_mrna
			protein_id	gnl|ncbi|FUN_000006-T1
35679	34843	gene
			locus_tag	FUN_000007
35679	35675	mRNA
35655	35648
35594	34843
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000007-T1_mrna
			protein_id	gnl|ncbi|FUN_000007-T1
35679	35675	CDS
35655	35648
35594	34843
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000007-T1_mrna
			protein_id	gnl|ncbi|FUN_000007-T1
40223	41234	gene
			locus_tag	FUN_000008
40223	40396	mRNA
40659	41234
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000008-T1_mrna
			protein_id	gnl|ncbi|FUN_000008-T1
40223	40396	CDS
40659	41234
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000008-T1_mrna
			protein_id	gnl|ncbi|FUN_000008-T1
41267	42107	gene
			locus_tag	FUN_000009
41267	41274	mRNA
41437	41444
41707	42107
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000009-T1_mrna
			protein_id	gnl|ncbi|FUN_000009-T1
41267	41274	CDS
41437	41444
41707	42107
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000009-T1_mrna
			protein_id	gnl|ncbi|FUN_000009-T1
87202	88320	gene
			locus_tag	FUN_000010
87202	87207	mRNA
88054	88320
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000010-T1_mrna
			protein_id	gnl|ncbi|FUN_000010-T1
87202	87207	CDS
88054	88320
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000010-T1_mrna
			protein_id	gnl|ncbi|FUN_000010-T1
94727	95583	gene
			locus_tag	FUN_000011
94727	94732	mRNA
94873	95016
95449	95583
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000011-T1_mrna
			protein_id	gnl|ncbi|FUN_000011-T1
94727	94732	CDS
94873	95016
95449	95583
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000011-T1_mrna
			protein_id	gnl|ncbi|FUN_000011-T1
133134	136346	gene
			locus_tag	FUN_000012
133134	133142	mRNA
133209	134539
134668	135510
135569	136346
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000012-T1_mrna
			protein_id	gnl|ncbi|FUN_000012-T1
133134	133142	CDS
133209	134539
134668	135510
135569	136346
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000012-T1_mrna
			protein_id	gnl|ncbi|FUN_000012-T1
144294	169416	gene
			locus_tag	FUN_000013
144294	144551	mRNA
149012	149244
149367	149588
149654	149897
149952	150112
150174	150248
151966	152072
152314	152429
152496	152751
153651	159010
159150	164491
167135	168360
168722	169208
169350	169416
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000013-T1_mrna
			protein_id	gnl|ncbi|FUN_000013-T1
144294	144551	CDS
149012	149244
149367	149588
149654	149897
149952	150112
150174	150248
151966	152072
152314	152429
152496	152751
153651	159010
159150	164491
167135	168360
168722	169208
169350	169416
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000013-T1_mrna
			protein_id	gnl|ncbi|FUN_000013-T1
192049	194669	gene
			locus_tag	FUN_000014
192049	192067	mRNA
193549	193658
194041	194455
194518	194669
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000014-T1_mrna
			protein_id	gnl|ncbi|FUN_000014-T1
192049	192067	CDS
193549	193658
194041	194455
194518	194669
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000014-T1_mrna
			protein_id	gnl|ncbi|FUN_000014-T1
210553	209044	gene
			locus_tag	FUN_000015
210553	210548	mRNA
210474	209044
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000015-T1_mrna
			protein_id	gnl|ncbi|FUN_000015-T1
210553	210548	CDS
210474	209044
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000015-T1_mrna
			protein_id	gnl|ncbi|FUN_000015-T1
>Feature sample4
1	7560	REFERENCE
			CFMR	12345
1466	1092	gene
			locus_tag	FUN_000016
1466	1092	mRNA
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000016-T1_mrna
			protein_id	gnl|ncbi|FUN_000016-T1
1466	1092	CDS
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000016-T1_mrna
			protein_id	gnl|ncbi|FUN_000016-T1
2126	3863	gene
			locus_tag	FUN_000017
2126	2199	mRNA
2258	3224
3284	3490
3549	3863
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000017-T1_mrna
			protein_id	gnl|ncbi|FUN_000017-T1
2126	2199	CDS
2258	3224
3284	3490
3549	3863
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000017-T1_mrna
			protein_id	gnl|ncbi|FUN_000017-T1
5494	4248	gene
			locus_tag	FUN_000018
5494	4930	mRNA
4759	4248
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000018-T1_mrna
			protein_id	gnl|ncbi|FUN_000018-T1
5494	4930	CDS
4759	4248
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000018-T1_mrna
			protein_id	gnl|ncbi|FUN_000018-T1