# HG changeset patch
# User iuc
# Date 1697796448 0
# Node ID b6b5cd37f2a2aed2112a6699a68c58ad5d64f552
# Parent  582fd74dc2a1b640153d625e2568094b5b0642c6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 90acc0e23230b2e29e1d38a90bca4009c84c7e67

diff -r 582fd74dc2a1 -r b6b5cd37f2a2 funannotate_annotate.xml
--- a/funannotate_annotate.xml	Tue Apr 25 18:29:19 2023 +0000
+++ b/funannotate_annotate.xml	Fri Oct 20 10:07:28 2023 +0000
@@ -71,6 +71,14 @@
 
 &&
 
+## funannotate sometimes leaves multiple *part.tbl and *part.sqn files
+## https://github.com/nextgenusfs/funannotate/issues/777
+find output/annotate_results 
+-regex ".*part_[0-9]\+\.\(sqn\|tbl\)$"
+-delete
+
+&&
+
 mv output/annotate_results/*.gbk out.gbk &&
 mv output/annotate_results/*.annotations.txt out.annotations.txt &&
 mv output/annotate_results/*.contigs.fsa out.contigs.fsa &&
@@ -206,7 +214,7 @@
         </data>
     </outputs>
     <tests>
-        <test>
+        <test expect_num_outputs="16">
             <conditional name="input">
                 <param name="input_type" value="gbk" />
                 <param name="genbank" value="predict_augustus/Genus_species.gbk" />
@@ -296,7 +304,7 @@
                 </assert_contents>
             </output>
         </test>
-        <test>
+        <test expect_num_outputs="16">
             <conditional name="input">
                 <param name="input_type" value="gff" />
                 <param name="gff" value="predict_augustus/Genus_species.gff3" />
diff -r 582fd74dc2a1 -r b6b5cd37f2a2 macros.xml
--- a/macros.xml	Tue Apr 25 18:29:19 2023 +0000
+++ b/macros.xml	Fri Oct 20 10:07:28 2023 +0000
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <macros>
     <token name="@TOOL_VERSION@">1.8.15</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@VERSION_SUFFIX@">2</token>
 
     <xml name="requirements">
         <requirement type="package" version="@TOOL_VERSION@">funannotate</requirement>