Mercurial > repos > iuc > funannotate_annotate
changeset 11:9c15ca7e764e draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 9e3708d04faea0f1be4ea8918e859d6f2c7eb31d
| author | iuc |
|---|---|
| date | Wed, 26 Jun 2024 09:41:52 +0000 |
| parents | d0336d67702b |
| children | |
| files | funannotate_annotate.xml macros.xml |
| diffstat | 2 files changed, 5 insertions(+), 4 deletions(-) [+] |
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--- a/funannotate_annotate.xml Sun Feb 11 00:08:00 2024 +0000 +++ b/funannotate_annotate.xml Wed Jun 26 09:41:52 2024 +0000 @@ -26,6 +26,7 @@ #end if --out output +--tmpdir "\${_GALAXY_JOB_TMP_DIR:-/tmp}" --database '$database.fields.path' @@ -76,7 +77,7 @@ ## https://github.com/nextgenusfs/funannotate/issues/777 ## The partial tbl files are combined by funannotate and are deleted below. ## The sqn files are discrete and are collected with discover_datasets. -find output/annotate_results +find output/annotate_results -regex ".*part_[0-9]+\.\(tbl\)$" -delete @@ -241,7 +242,7 @@ <assert_contents> <has_text text="Seq-submit" /> </assert_contents> - </element> + </element> </output_collection> <output name="fa_scaffolds"> <assert_contents> @@ -335,7 +336,7 @@ <assert_contents> <has_text text="Seq-submit" /> </assert_contents> - </element> + </element> </output_collection> <output name="fa_scaffolds"> <assert_contents>
--- a/macros.xml Sun Feb 11 00:08:00 2024 +0000 +++ b/macros.xml Wed Jun 26 09:41:52 2024 +0000 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <macros> <token name="@TOOL_VERSION@">1.8.15</token> - <token name="@VERSION_SUFFIX@">4</token> + <token name="@VERSION_SUFFIX@">5</token> <xml name="biotools"> <xrefs> <xref type="bio.tools">