Mercurial > repos > iuc > funannotate_clean

annotate test-data/funannotate_options.loc @ 13:19ddd5557b4f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 0b6712733bce2e4ec6b276a6dec9c7b4bff5a5cd
author iuc
date Sun, 09 Mar 2025 09:35:15 +0000
parents 5c09ad60911c
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5c09ad60911c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8341270dd36185ebf59d15282bc79f1215e936a4
iuc
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1 # this is a tab separated file describing options available for selects in the funannotate tool
5c09ad60911c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8341270dd36185ebf59d15282bc79f1215e936a4
iuc
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2 # these options are derived separetely for each funannotate DB
5c09ad60911c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8341270dd36185ebf59d15282bc79f1215e936a4
iuc
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3 #
5c09ad60911c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8341270dd36185ebf59d15282bc79f1215e936a4
iuc
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4 # the columns are:
5c09ad60911c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8341270dd36185ebf59d15282bc79f1215e936a4
iuc
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5 # value name select db_value
5c09ad60911c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8341270dd36185ebf59d15282bc79f1215e936a4
iuc
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6 #
5c09ad60911c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8341270dd36185ebf59d15282bc79f1215e936a4
iuc
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7 # db_value is the ID of the funannotate DB
5c09ad60911c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8341270dd36185ebf59d15282bc79f1215e936a4
iuc
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8 # value and name are the value and name to be used
5c09ad60911c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8341270dd36185ebf59d15282bc79f1215e936a4
iuc
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9 # select describes the command line parameter / select for which the values can be used
5c09ad60911c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8341270dd36185ebf59d15282bc79f1215e936a4
iuc
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10 insecta Insecta busco_db 2021-07-20-120000
5c09ad60911c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8341270dd36185ebf59d15282bc79f1215e936a4
iuc
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11 dikarya Dikarya busco_db 2021-07-20-120000
5c09ad60911c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8341270dd36185ebf59d15282bc79f1215e936a4
iuc
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12 fly Fly trained_species 2021-07-20-120000
5c09ad60911c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8341270dd36185ebf59d15282bc79f1215e936a4
iuc
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13 anidulans Anidulans trained_species 2021-07-20-120000
5c09ad60911c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8341270dd36185ebf59d15282bc79f1215e936a4
iuc
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14 botrytis_cinerea.dikarya botrytis_cinerea.dikarya outgroup 2021-07-20-120000