Mercurial > repos > iuc > funannotate_clean

comparison funannotate_clean.xml @ 12:5c09ad60911c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8341270dd36185ebf59d15282bc79f1215e936a4
author iuc
date Fri, 07 Mar 2025 22:34:18 +0000
parents 989f7c061f35
children
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11:8e1ace8f77c6 12:5c09ad60911c
19 --cpus \${GALAXY_SLOTS:-1} 19 --cpus \${GALAXY_SLOTS:-1}
20 ]]></command> 20 ]]></command>
21 <inputs> 21 <inputs>
22 <param argument="--input" type="data" format="fasta" label="Assembly to clean" /> 22 <param argument="--input" type="data" format="fasta" label="Assembly to clean" />
23 23
24 <param argument="--pident" type="integer" value="95" label="Percent identity of overlap" /> 24 <param argument="--pident" type="integer" value="95" min="0" max="100" label="Percent identity of overlap" />
25 <param argument="--cov" type="integer" value="95" label="Percent coverage of overlap" /> 25 <param argument="--cov" type="integer" value="95" min="0" max="100" label="Percent coverage of overlap" />
26 <param argument="--minlen" type="integer" value="500" label="Minimum length of contig to keep" /> 26 <param argument="--minlen" type="integer" min="0" value="500" label="Minimum length of contig to keep" />
27 27
28 <param argument="--exhaustive" type="boolean" checked="false" truevalue="--exhaustive" falsevalue="" label="Test every contig" help="Default is to stop at N50 value" /> 28 <param argument="--exhaustive" type="boolean" checked="false" truevalue="--exhaustive" falsevalue="" label="Test every contig" help="Default is to stop at N50 value" />
29 </inputs> 29 </inputs>
30 <outputs> 30 <outputs>
31 <data name='output' format='fasta' label="${tool.name} on ${on_string}: cleaned assembly" /> 31 <data name='output' format='fasta' label="${tool.name} on ${on_string}: cleaned assembly" />