diff test-data/predict_bam/Genus_species.gff3 @ 0:b5ec3983deda draft

"planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
author iuc
date Thu, 26 Aug 2021 06:57:03 +0000
parents
children
line wrap: on
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/predict_bam/Genus_species.gff3	Thu Aug 26 06:57:03 2021 +0000
@@ -0,0 +1,145 @@
+##gff-version 3
+sample	funannotate	gene	2331	3254	.	+	.	ID=FUN_000001;
+sample	funannotate	mRNA	2331	3254	.	+	.	ID=FUN_000001-T1;Parent=FUN_000001;product=hypothetical protein;
+sample	funannotate	exon	2331	3254	.	+	.	ID=FUN_000001-T1.exon1;Parent=FUN_000001-T1;
+sample	funannotate	CDS	2331	3254	.	+	0	ID=FUN_000001-T1.cds;Parent=FUN_000001-T1;
+sample	funannotate	gene	4883	5802	.	-	.	ID=FUN_000002;
+sample	funannotate	mRNA	4883	5802	.	-	.	ID=FUN_000002-T1;Parent=FUN_000002;product=hypothetical protein;
+sample	funannotate	exon	5797	5802	.	-	.	ID=FUN_000002-T1.exon1;Parent=FUN_000002-T1;
+sample	funannotate	exon	4883	5539	.	-	.	ID=FUN_000002-T1.exon2;Parent=FUN_000002-T1;
+sample	funannotate	CDS	5797	5802	.	-	0	ID=FUN_000002-T1.cds;Parent=FUN_000002-T1;
+sample	funannotate	CDS	4883	5539	.	-	0	ID=FUN_000002-T1.cds;Parent=FUN_000002-T1;
+sample	funannotate	gene	8696	10557	.	-	.	ID=FUN_000003;
+sample	funannotate	mRNA	8696	10557	.	-	.	ID=FUN_000003-T1;Parent=FUN_000003;product=hypothetical protein;
+sample	funannotate	exon	10549	10557	.	-	.	ID=FUN_000003-T1.exon1;Parent=FUN_000003-T1;
+sample	funannotate	exon	8696	10462	.	-	.	ID=FUN_000003-T1.exon2;Parent=FUN_000003-T1;
+sample	funannotate	CDS	10549	10557	.	-	0	ID=FUN_000003-T1.cds;Parent=FUN_000003-T1;
+sample	funannotate	CDS	8696	10462	.	-	0	ID=FUN_000003-T1.cds;Parent=FUN_000003-T1;
+sample	funannotate	gene	14247	15214	.	-	.	ID=FUN_000004;
+sample	funannotate	mRNA	14247	15214	.	-	.	ID=FUN_000004-T1;Parent=FUN_000004;product=hypothetical protein;
+sample	funannotate	exon	15209	15214	.	-	.	ID=FUN_000004-T1.exon1;Parent=FUN_000004-T1;
+sample	funannotate	exon	14247	14648	.	-	.	ID=FUN_000004-T1.exon2;Parent=FUN_000004-T1;
+sample	funannotate	CDS	15209	15214	.	-	0	ID=FUN_000004-T1.cds;Parent=FUN_000004-T1;
+sample	funannotate	CDS	14247	14648	.	-	0	ID=FUN_000004-T1.cds;Parent=FUN_000004-T1;
+sample	funannotate	gene	19533	21705	.	-	.	ID=FUN_000005;
+sample	funannotate	mRNA	19533	21705	.	-	.	ID=FUN_000005-T1;Parent=FUN_000005;product=hypothetical protein;
+sample	funannotate	exon	21700	21705	.	-	.	ID=FUN_000005-T1.exon1;Parent=FUN_000005-T1;
+sample	funannotate	exon	19533	21515	.	-	.	ID=FUN_000005-T1.exon2;Parent=FUN_000005-T1;
+sample	funannotate	CDS	21700	21705	.	-	0	ID=FUN_000005-T1.cds;Parent=FUN_000005-T1;
+sample	funannotate	CDS	19533	21515	.	-	0	ID=FUN_000005-T1.cds;Parent=FUN_000005-T1;
+sample	funannotate	gene	34843	35679	.	-	.	ID=FUN_000006;
+sample	funannotate	mRNA	34843	35679	.	-	.	ID=FUN_000006-T1;Parent=FUN_000006;product=hypothetical protein;
+sample	funannotate	exon	34843	35679	.	-	.	ID=FUN_000006-T1.exon1;Parent=FUN_000006-T1;
+sample	funannotate	CDS	34843	35679	.	-	0	ID=FUN_000006-T1.cds;Parent=FUN_000006-T1;
+sample	funannotate	gene	40223	44130	.	+	.	ID=FUN_000007;
+sample	funannotate	mRNA	40223	44130	.	+	.	ID=FUN_000007-T1;Parent=FUN_000007;product=hypothetical protein;
+sample	funannotate	exon	40223	40396	.	+	.	ID=FUN_000007-T1.exon1;Parent=FUN_000007-T1;
+sample	funannotate	exon	40659	41193	.	+	.	ID=FUN_000007-T1.exon2;Parent=FUN_000007-T1;
+sample	funannotate	exon	41707	42080	.	+	.	ID=FUN_000007-T1.exon3;Parent=FUN_000007-T1;
+sample	funannotate	exon	43409	43609	.	+	.	ID=FUN_000007-T1.exon4;Parent=FUN_000007-T1;
+sample	funannotate	exon	43678	44130	.	+	.	ID=FUN_000007-T1.exon5;Parent=FUN_000007-T1;
+sample	funannotate	CDS	40223	40396	.	+	0	ID=FUN_000007-T1.cds;Parent=FUN_000007-T1;
+sample	funannotate	CDS	40659	41193	.	+	0	ID=FUN_000007-T1.cds;Parent=FUN_000007-T1;
+sample	funannotate	CDS	41707	42080	.	+	2	ID=FUN_000007-T1.cds;Parent=FUN_000007-T1;
+sample	funannotate	CDS	43409	43609	.	+	0	ID=FUN_000007-T1.cds;Parent=FUN_000007-T1;
+sample	funannotate	CDS	43678	44130	.	+	0	ID=FUN_000007-T1.cds;Parent=FUN_000007-T1;
+sample	funannotate	gene	45527	47195	.	-	.	ID=FUN_000008;
+sample	funannotate	mRNA	45527	47195	.	-	.	ID=FUN_000008-T1;Parent=FUN_000008;product=hypothetical protein;
+sample	funannotate	exon	46753	47195	.	-	.	ID=FUN_000008-T1.exon1;Parent=FUN_000008-T1;
+sample	funannotate	exon	46214	46330	.	-	.	ID=FUN_000008-T1.exon2;Parent=FUN_000008-T1;
+sample	funannotate	exon	45527	46157	.	-	.	ID=FUN_000008-T1.exon3;Parent=FUN_000008-T1;
+sample	funannotate	CDS	46753	47195	.	-	0	ID=FUN_000008-T1.cds;Parent=FUN_000008-T1;
+sample	funannotate	CDS	46214	46330	.	-	1	ID=FUN_000008-T1.cds;Parent=FUN_000008-T1;
+sample	funannotate	CDS	45527	46157	.	-	1	ID=FUN_000008-T1.cds;Parent=FUN_000008-T1;
+sample	funannotate	gene	78685	79527	.	-	.	ID=FUN_000009;
+sample	funannotate	mRNA	78685	79527	.	-	.	ID=FUN_000009-T1;Parent=FUN_000009;product=hypothetical protein;
+sample	funannotate	exon	79519	79527	.	-	.	ID=FUN_000009-T1.exon1;Parent=FUN_000009-T1;
+sample	funannotate	exon	78685	79068	.	-	.	ID=FUN_000009-T1.exon2;Parent=FUN_000009-T1;
+sample	funannotate	CDS	79519	79527	.	-	0	ID=FUN_000009-T1.cds;Parent=FUN_000009-T1;
+sample	funannotate	CDS	78685	79068	.	-	0	ID=FUN_000009-T1.cds;Parent=FUN_000009-T1;
+sample	funannotate	gene	87202	88320	.	+	.	ID=FUN_000010;
+sample	funannotate	mRNA	87202	88320	.	+	.	ID=FUN_000010-T1;Parent=FUN_000010;product=hypothetical protein;
+sample	funannotate	exon	87202	87207	.	+	.	ID=FUN_000010-T1.exon1;Parent=FUN_000010-T1;
+sample	funannotate	exon	88054	88320	.	+	.	ID=FUN_000010-T1.exon2;Parent=FUN_000010-T1;
+sample	funannotate	CDS	87202	87207	.	+	0	ID=FUN_000010-T1.cds;Parent=FUN_000010-T1;
+sample	funannotate	CDS	88054	88320	.	+	0	ID=FUN_000010-T1.cds;Parent=FUN_000010-T1;
+sample	funannotate	gene	133587	137862	.	+	.	ID=FUN_000011;
+sample	funannotate	mRNA	133587	137862	.	+	.	ID=FUN_000011-T1;Parent=FUN_000011;product=hypothetical protein;
+sample	funannotate	exon	133587	134504	.	+	.	ID=FUN_000011-T1.exon1;Parent=FUN_000011-T1;
+sample	funannotate	exon	134720	135510	.	+	.	ID=FUN_000011-T1.exon2;Parent=FUN_000011-T1;
+sample	funannotate	exon	135569	136284	.	+	.	ID=FUN_000011-T1.exon3;Parent=FUN_000011-T1;
+sample	funannotate	exon	137516	137862	.	+	.	ID=FUN_000011-T1.exon4;Parent=FUN_000011-T1;
+sample	funannotate	CDS	133587	134504	.	+	0	ID=FUN_000011-T1.cds;Parent=FUN_000011-T1;
+sample	funannotate	CDS	134720	135510	.	+	0	ID=FUN_000011-T1.cds;Parent=FUN_000011-T1;
+sample	funannotate	CDS	135569	136284	.	+	1	ID=FUN_000011-T1.cds;Parent=FUN_000011-T1;
+sample	funannotate	CDS	137516	137862	.	+	2	ID=FUN_000011-T1.cds;Parent=FUN_000011-T1;
+sample	funannotate	gene	144294	164495	.	+	.	ID=FUN_000012;
+sample	funannotate	mRNA	144294	164495	.	+	.	ID=FUN_000012-T1;Parent=FUN_000012;product=hypothetical protein;
+sample	funannotate	exon	144294	144551	.	+	.	ID=FUN_000012-T1.exon1;Parent=FUN_000012-T1;
+sample	funannotate	exon	149012	149244	.	+	.	ID=FUN_000012-T1.exon2;Parent=FUN_000012-T1;
+sample	funannotate	exon	149367	149588	.	+	.	ID=FUN_000012-T1.exon3;Parent=FUN_000012-T1;
+sample	funannotate	exon	149654	149897	.	+	.	ID=FUN_000012-T1.exon4;Parent=FUN_000012-T1;
+sample	funannotate	exon	149952	150112	.	+	.	ID=FUN_000012-T1.exon5;Parent=FUN_000012-T1;
+sample	funannotate	exon	150174	150248	.	+	.	ID=FUN_000012-T1.exon6;Parent=FUN_000012-T1;
+sample	funannotate	exon	151966	152072	.	+	.	ID=FUN_000012-T1.exon7;Parent=FUN_000012-T1;
+sample	funannotate	exon	152314	152429	.	+	.	ID=FUN_000012-T1.exon8;Parent=FUN_000012-T1;
+sample	funannotate	exon	152496	152751	.	+	.	ID=FUN_000012-T1.exon9;Parent=FUN_000012-T1;
+sample	funannotate	exon	153296	153630	.	+	.	ID=FUN_000012-T1.exon10;Parent=FUN_000012-T1;
+sample	funannotate	exon	153689	155122	.	+	.	ID=FUN_000012-T1.exon11;Parent=FUN_000012-T1;
+sample	funannotate	exon	155789	158975	.	+	.	ID=FUN_000012-T1.exon12;Parent=FUN_000012-T1;
+sample	funannotate	exon	159190	164495	.	+	.	ID=FUN_000012-T1.exon13;Parent=FUN_000012-T1;
+sample	funannotate	CDS	144294	144551	.	+	0	ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
+sample	funannotate	CDS	149012	149244	.	+	0	ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
+sample	funannotate	CDS	149367	149588	.	+	1	ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
+sample	funannotate	CDS	149654	149897	.	+	1	ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
+sample	funannotate	CDS	149952	150112	.	+	0	ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
+sample	funannotate	CDS	150174	150248	.	+	1	ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
+sample	funannotate	CDS	151966	152072	.	+	1	ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
+sample	funannotate	CDS	152314	152429	.	+	2	ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
+sample	funannotate	CDS	152496	152751	.	+	0	ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
+sample	funannotate	CDS	153296	153630	.	+	2	ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
+sample	funannotate	CDS	153689	155122	.	+	0	ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
+sample	funannotate	CDS	155789	158975	.	+	0	ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
+sample	funannotate	CDS	159190	164495	.	+	2	ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
+sample	funannotate	gene	167121	169212	.	+	.	ID=FUN_000013;
+sample	funannotate	mRNA	167121	169212	.	+	.	ID=FUN_000013-T1;Parent=FUN_000013;product=hypothetical protein;
+sample	funannotate	exon	167121	168360	.	+	.	ID=FUN_000013-T1.exon1;Parent=FUN_000013-T1;
+sample	funannotate	exon	168722	169212	.	+	.	ID=FUN_000013-T1.exon2;Parent=FUN_000013-T1;
+sample	funannotate	CDS	167121	168360	.	+	0	ID=FUN_000013-T1.cds;Parent=FUN_000013-T1;
+sample	funannotate	CDS	168722	169212	.	+	2	ID=FUN_000013-T1.cds;Parent=FUN_000013-T1;
+sample	funannotate	gene	176699	178916	.	-	.	ID=FUN_000014;
+sample	funannotate	mRNA	176699	178916	.	-	.	ID=FUN_000014-T1;Parent=FUN_000014;product=hypothetical protein;
+sample	funannotate	exon	178873	178916	.	-	.	ID=FUN_000014-T1.exon1;Parent=FUN_000014-T1;
+sample	funannotate	exon	176887	177172	.	-	.	ID=FUN_000014-T1.exon2;Parent=FUN_000014-T1;
+sample	funannotate	exon	176699	176824	.	-	.	ID=FUN_000014-T1.exon3;Parent=FUN_000014-T1;
+sample	funannotate	CDS	178873	178916	.	-	0	ID=FUN_000014-T1.cds;Parent=FUN_000014-T1;
+sample	funannotate	CDS	176887	177172	.	-	1	ID=FUN_000014-T1.cds;Parent=FUN_000014-T1;
+sample	funannotate	CDS	176699	176824	.	-	0	ID=FUN_000014-T1.cds;Parent=FUN_000014-T1;
+sample	funannotate	gene	192004	194669	.	+	.	ID=FUN_000015;
+sample	funannotate	mRNA	192004	194669	.	+	.	ID=FUN_000015-T1;Parent=FUN_000015;product=hypothetical protein;
+sample	funannotate	exon	192004	192067	.	+	.	ID=FUN_000015-T1.exon1;Parent=FUN_000015-T1;
+sample	funannotate	exon	193549	193658	.	+	.	ID=FUN_000015-T1.exon2;Parent=FUN_000015-T1;
+sample	funannotate	exon	194041	194455	.	+	.	ID=FUN_000015-T1.exon3;Parent=FUN_000015-T1;
+sample	funannotate	exon	194518	194669	.	+	.	ID=FUN_000015-T1.exon4;Parent=FUN_000015-T1;
+sample	funannotate	CDS	192004	192067	.	+	0	ID=FUN_000015-T1.cds;Parent=FUN_000015-T1;
+sample	funannotate	CDS	193549	193658	.	+	2	ID=FUN_000015-T1.cds;Parent=FUN_000015-T1;
+sample	funannotate	CDS	194041	194455	.	+	0	ID=FUN_000015-T1.cds;Parent=FUN_000015-T1;
+sample	funannotate	CDS	194518	194669	.	+	2	ID=FUN_000015-T1.cds;Parent=FUN_000015-T1;
+sample	funannotate	gene	209044	210553	.	-	.	ID=FUN_000016;
+sample	funannotate	mRNA	209044	210553	.	-	.	ID=FUN_000016-T1;Parent=FUN_000016;product=hypothetical protein;
+sample	funannotate	exon	210548	210553	.	-	.	ID=FUN_000016-T1.exon1;Parent=FUN_000016-T1;
+sample	funannotate	exon	209044	210474	.	-	.	ID=FUN_000016-T1.exon2;Parent=FUN_000016-T1;
+sample	funannotate	CDS	210548	210553	.	-	0	ID=FUN_000016-T1.cds;Parent=FUN_000016-T1;
+sample	funannotate	CDS	209044	210474	.	-	0	ID=FUN_000016-T1.cds;Parent=FUN_000016-T1;
+sample4	funannotate	gene	1092	1466	.	-	.	ID=FUN_000017;
+sample4	funannotate	mRNA	1092	1466	.	-	.	ID=FUN_000017-T1;Parent=FUN_000017;product=hypothetical protein;
+sample4	funannotate	exon	1092	1466	.	-	.	ID=FUN_000017-T1.exon1;Parent=FUN_000017-T1;
+sample4	funannotate	CDS	1092	1466	.	-	0	ID=FUN_000017-T1.cds;Parent=FUN_000017-T1;
+sample4	funannotate	gene	2126	3537	.	+	.	ID=FUN_000018;
+sample4	funannotate	mRNA	2126	3537	.	+	.	ID=FUN_000018-T1;Parent=FUN_000018;product=hypothetical protein;
+sample4	funannotate	exon	2126	2199	.	+	.	ID=FUN_000018-T1.exon1;Parent=FUN_000018-T1;
+sample4	funannotate	exon	2258	3224	.	+	.	ID=FUN_000018-T1.exon2;Parent=FUN_000018-T1;
+sample4	funannotate	exon	3284	3537	.	+	.	ID=FUN_000018-T1.exon3;Parent=FUN_000018-T1;
+sample4	funannotate	CDS	2126	2199	.	+	0	ID=FUN_000018-T1.cds;Parent=FUN_000018-T1;
+sample4	funannotate	CDS	2258	3224	.	+	1	ID=FUN_000018-T1.cds;Parent=FUN_000018-T1;
+sample4	funannotate	CDS	3284	3537	.	+	0	ID=FUN_000018-T1.cds;Parent=FUN_000018-T1;