Mercurial > repos > iuc > funannotate_clean
diff test-data/predict_bam/Genus_species.gff3 @ 0:b5ec3983deda draft
"planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
| author | iuc |
|---|---|
| date | Thu, 26 Aug 2021 06:57:03 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/predict_bam/Genus_species.gff3 Thu Aug 26 06:57:03 2021 +0000 @@ -0,0 +1,145 @@ +##gff-version 3 +sample funannotate gene 2331 3254 . + . ID=FUN_000001; +sample funannotate mRNA 2331 3254 . + . ID=FUN_000001-T1;Parent=FUN_000001;product=hypothetical protein; +sample funannotate exon 2331 3254 . + . ID=FUN_000001-T1.exon1;Parent=FUN_000001-T1; +sample funannotate CDS 2331 3254 . + 0 ID=FUN_000001-T1.cds;Parent=FUN_000001-T1; +sample funannotate gene 4883 5802 . - . ID=FUN_000002; +sample funannotate mRNA 4883 5802 . - . ID=FUN_000002-T1;Parent=FUN_000002;product=hypothetical protein; +sample funannotate exon 5797 5802 . - . ID=FUN_000002-T1.exon1;Parent=FUN_000002-T1; +sample funannotate exon 4883 5539 . - . ID=FUN_000002-T1.exon2;Parent=FUN_000002-T1; +sample funannotate CDS 5797 5802 . - 0 ID=FUN_000002-T1.cds;Parent=FUN_000002-T1; +sample funannotate CDS 4883 5539 . - 0 ID=FUN_000002-T1.cds;Parent=FUN_000002-T1; +sample funannotate gene 8696 10557 . - . ID=FUN_000003; +sample funannotate mRNA 8696 10557 . - . ID=FUN_000003-T1;Parent=FUN_000003;product=hypothetical protein; +sample funannotate exon 10549 10557 . - . ID=FUN_000003-T1.exon1;Parent=FUN_000003-T1; +sample funannotate exon 8696 10462 . - . ID=FUN_000003-T1.exon2;Parent=FUN_000003-T1; +sample funannotate CDS 10549 10557 . - 0 ID=FUN_000003-T1.cds;Parent=FUN_000003-T1; +sample funannotate CDS 8696 10462 . - 0 ID=FUN_000003-T1.cds;Parent=FUN_000003-T1; +sample funannotate gene 14247 15214 . - . ID=FUN_000004; +sample funannotate mRNA 14247 15214 . - . ID=FUN_000004-T1;Parent=FUN_000004;product=hypothetical protein; +sample funannotate exon 15209 15214 . - . ID=FUN_000004-T1.exon1;Parent=FUN_000004-T1; +sample funannotate exon 14247 14648 . - . ID=FUN_000004-T1.exon2;Parent=FUN_000004-T1; +sample funannotate CDS 15209 15214 . - 0 ID=FUN_000004-T1.cds;Parent=FUN_000004-T1; +sample funannotate CDS 14247 14648 . - 0 ID=FUN_000004-T1.cds;Parent=FUN_000004-T1; +sample funannotate gene 19533 21705 . - . ID=FUN_000005; +sample funannotate mRNA 19533 21705 . - . ID=FUN_000005-T1;Parent=FUN_000005;product=hypothetical protein; +sample funannotate exon 21700 21705 . - . ID=FUN_000005-T1.exon1;Parent=FUN_000005-T1; +sample funannotate exon 19533 21515 . - . ID=FUN_000005-T1.exon2;Parent=FUN_000005-T1; +sample funannotate CDS 21700 21705 . - 0 ID=FUN_000005-T1.cds;Parent=FUN_000005-T1; +sample funannotate CDS 19533 21515 . - 0 ID=FUN_000005-T1.cds;Parent=FUN_000005-T1; +sample funannotate gene 34843 35679 . - . ID=FUN_000006; +sample funannotate mRNA 34843 35679 . - . ID=FUN_000006-T1;Parent=FUN_000006;product=hypothetical protein; +sample funannotate exon 34843 35679 . - . ID=FUN_000006-T1.exon1;Parent=FUN_000006-T1; +sample funannotate CDS 34843 35679 . - 0 ID=FUN_000006-T1.cds;Parent=FUN_000006-T1; +sample funannotate gene 40223 44130 . + . ID=FUN_000007; +sample funannotate mRNA 40223 44130 . + . ID=FUN_000007-T1;Parent=FUN_000007;product=hypothetical protein; +sample funannotate exon 40223 40396 . + . ID=FUN_000007-T1.exon1;Parent=FUN_000007-T1; +sample funannotate exon 40659 41193 . + . ID=FUN_000007-T1.exon2;Parent=FUN_000007-T1; +sample funannotate exon 41707 42080 . + . ID=FUN_000007-T1.exon3;Parent=FUN_000007-T1; +sample funannotate exon 43409 43609 . + . ID=FUN_000007-T1.exon4;Parent=FUN_000007-T1; +sample funannotate exon 43678 44130 . + . ID=FUN_000007-T1.exon5;Parent=FUN_000007-T1; +sample funannotate CDS 40223 40396 . + 0 ID=FUN_000007-T1.cds;Parent=FUN_000007-T1; +sample funannotate CDS 40659 41193 . + 0 ID=FUN_000007-T1.cds;Parent=FUN_000007-T1; +sample funannotate CDS 41707 42080 . + 2 ID=FUN_000007-T1.cds;Parent=FUN_000007-T1; +sample funannotate CDS 43409 43609 . + 0 ID=FUN_000007-T1.cds;Parent=FUN_000007-T1; +sample funannotate CDS 43678 44130 . + 0 ID=FUN_000007-T1.cds;Parent=FUN_000007-T1; +sample funannotate gene 45527 47195 . - . ID=FUN_000008; +sample funannotate mRNA 45527 47195 . - . ID=FUN_000008-T1;Parent=FUN_000008;product=hypothetical protein; +sample funannotate exon 46753 47195 . - . ID=FUN_000008-T1.exon1;Parent=FUN_000008-T1; +sample funannotate exon 46214 46330 . - . ID=FUN_000008-T1.exon2;Parent=FUN_000008-T1; +sample funannotate exon 45527 46157 . - . ID=FUN_000008-T1.exon3;Parent=FUN_000008-T1; +sample funannotate CDS 46753 47195 . - 0 ID=FUN_000008-T1.cds;Parent=FUN_000008-T1; +sample funannotate CDS 46214 46330 . - 1 ID=FUN_000008-T1.cds;Parent=FUN_000008-T1; +sample funannotate CDS 45527 46157 . - 1 ID=FUN_000008-T1.cds;Parent=FUN_000008-T1; +sample funannotate gene 78685 79527 . - . ID=FUN_000009; +sample funannotate mRNA 78685 79527 . - . ID=FUN_000009-T1;Parent=FUN_000009;product=hypothetical protein; +sample funannotate exon 79519 79527 . - . ID=FUN_000009-T1.exon1;Parent=FUN_000009-T1; +sample funannotate exon 78685 79068 . - . ID=FUN_000009-T1.exon2;Parent=FUN_000009-T1; +sample funannotate CDS 79519 79527 . - 0 ID=FUN_000009-T1.cds;Parent=FUN_000009-T1; +sample funannotate CDS 78685 79068 . - 0 ID=FUN_000009-T1.cds;Parent=FUN_000009-T1; +sample funannotate gene 87202 88320 . + . ID=FUN_000010; +sample funannotate mRNA 87202 88320 . + . ID=FUN_000010-T1;Parent=FUN_000010;product=hypothetical protein; +sample funannotate exon 87202 87207 . + . ID=FUN_000010-T1.exon1;Parent=FUN_000010-T1; +sample funannotate exon 88054 88320 . + . ID=FUN_000010-T1.exon2;Parent=FUN_000010-T1; +sample funannotate CDS 87202 87207 . + 0 ID=FUN_000010-T1.cds;Parent=FUN_000010-T1; +sample funannotate CDS 88054 88320 . + 0 ID=FUN_000010-T1.cds;Parent=FUN_000010-T1; +sample funannotate gene 133587 137862 . + . ID=FUN_000011; +sample funannotate mRNA 133587 137862 . + . ID=FUN_000011-T1;Parent=FUN_000011;product=hypothetical protein; +sample funannotate exon 133587 134504 . + . ID=FUN_000011-T1.exon1;Parent=FUN_000011-T1; +sample funannotate exon 134720 135510 . + . ID=FUN_000011-T1.exon2;Parent=FUN_000011-T1; +sample funannotate exon 135569 136284 . + . ID=FUN_000011-T1.exon3;Parent=FUN_000011-T1; +sample funannotate exon 137516 137862 . + . ID=FUN_000011-T1.exon4;Parent=FUN_000011-T1; +sample funannotate CDS 133587 134504 . + 0 ID=FUN_000011-T1.cds;Parent=FUN_000011-T1; +sample funannotate CDS 134720 135510 . + 0 ID=FUN_000011-T1.cds;Parent=FUN_000011-T1; +sample funannotate CDS 135569 136284 . + 1 ID=FUN_000011-T1.cds;Parent=FUN_000011-T1; +sample funannotate CDS 137516 137862 . + 2 ID=FUN_000011-T1.cds;Parent=FUN_000011-T1; +sample funannotate gene 144294 164495 . + . ID=FUN_000012; +sample funannotate mRNA 144294 164495 . + . ID=FUN_000012-T1;Parent=FUN_000012;product=hypothetical protein; +sample funannotate exon 144294 144551 . + . ID=FUN_000012-T1.exon1;Parent=FUN_000012-T1; +sample funannotate exon 149012 149244 . + . ID=FUN_000012-T1.exon2;Parent=FUN_000012-T1; +sample funannotate exon 149367 149588 . + . ID=FUN_000012-T1.exon3;Parent=FUN_000012-T1; +sample funannotate exon 149654 149897 . + . ID=FUN_000012-T1.exon4;Parent=FUN_000012-T1; +sample funannotate exon 149952 150112 . + . ID=FUN_000012-T1.exon5;Parent=FUN_000012-T1; +sample funannotate exon 150174 150248 . + . ID=FUN_000012-T1.exon6;Parent=FUN_000012-T1; +sample funannotate exon 151966 152072 . + . ID=FUN_000012-T1.exon7;Parent=FUN_000012-T1; +sample funannotate exon 152314 152429 . + . ID=FUN_000012-T1.exon8;Parent=FUN_000012-T1; +sample funannotate exon 152496 152751 . + . ID=FUN_000012-T1.exon9;Parent=FUN_000012-T1; +sample funannotate exon 153296 153630 . + . ID=FUN_000012-T1.exon10;Parent=FUN_000012-T1; +sample funannotate exon 153689 155122 . + . ID=FUN_000012-T1.exon11;Parent=FUN_000012-T1; +sample funannotate exon 155789 158975 . + . ID=FUN_000012-T1.exon12;Parent=FUN_000012-T1; +sample funannotate exon 159190 164495 . + . ID=FUN_000012-T1.exon13;Parent=FUN_000012-T1; +sample funannotate CDS 144294 144551 . + 0 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1; +sample funannotate CDS 149012 149244 . + 0 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1; +sample funannotate CDS 149367 149588 . + 1 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1; +sample funannotate CDS 149654 149897 . + 1 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1; +sample funannotate CDS 149952 150112 . + 0 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1; +sample funannotate CDS 150174 150248 . + 1 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1; +sample funannotate CDS 151966 152072 . + 1 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1; +sample funannotate CDS 152314 152429 . + 2 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1; +sample funannotate CDS 152496 152751 . + 0 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1; +sample funannotate CDS 153296 153630 . + 2 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1; +sample funannotate CDS 153689 155122 . + 0 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1; +sample funannotate CDS 155789 158975 . + 0 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1; +sample funannotate CDS 159190 164495 . + 2 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1; +sample funannotate gene 167121 169212 . + . ID=FUN_000013; +sample funannotate mRNA 167121 169212 . + . ID=FUN_000013-T1;Parent=FUN_000013;product=hypothetical protein; +sample funannotate exon 167121 168360 . + . ID=FUN_000013-T1.exon1;Parent=FUN_000013-T1; +sample funannotate exon 168722 169212 . + . ID=FUN_000013-T1.exon2;Parent=FUN_000013-T1; +sample funannotate CDS 167121 168360 . + 0 ID=FUN_000013-T1.cds;Parent=FUN_000013-T1; +sample funannotate CDS 168722 169212 . + 2 ID=FUN_000013-T1.cds;Parent=FUN_000013-T1; +sample funannotate gene 176699 178916 . - . ID=FUN_000014; +sample funannotate mRNA 176699 178916 . - . ID=FUN_000014-T1;Parent=FUN_000014;product=hypothetical protein; +sample funannotate exon 178873 178916 . - . ID=FUN_000014-T1.exon1;Parent=FUN_000014-T1; +sample funannotate exon 176887 177172 . - . ID=FUN_000014-T1.exon2;Parent=FUN_000014-T1; +sample funannotate exon 176699 176824 . - . ID=FUN_000014-T1.exon3;Parent=FUN_000014-T1; +sample funannotate CDS 178873 178916 . - 0 ID=FUN_000014-T1.cds;Parent=FUN_000014-T1; +sample funannotate CDS 176887 177172 . - 1 ID=FUN_000014-T1.cds;Parent=FUN_000014-T1; +sample funannotate CDS 176699 176824 . - 0 ID=FUN_000014-T1.cds;Parent=FUN_000014-T1; +sample funannotate gene 192004 194669 . + . ID=FUN_000015; +sample funannotate mRNA 192004 194669 . + . ID=FUN_000015-T1;Parent=FUN_000015;product=hypothetical protein; +sample funannotate exon 192004 192067 . + . ID=FUN_000015-T1.exon1;Parent=FUN_000015-T1; +sample funannotate exon 193549 193658 . + . ID=FUN_000015-T1.exon2;Parent=FUN_000015-T1; +sample funannotate exon 194041 194455 . + . ID=FUN_000015-T1.exon3;Parent=FUN_000015-T1; +sample funannotate exon 194518 194669 . + . ID=FUN_000015-T1.exon4;Parent=FUN_000015-T1; +sample funannotate CDS 192004 192067 . + 0 ID=FUN_000015-T1.cds;Parent=FUN_000015-T1; +sample funannotate CDS 193549 193658 . + 2 ID=FUN_000015-T1.cds;Parent=FUN_000015-T1; +sample funannotate CDS 194041 194455 . + 0 ID=FUN_000015-T1.cds;Parent=FUN_000015-T1; +sample funannotate CDS 194518 194669 . + 2 ID=FUN_000015-T1.cds;Parent=FUN_000015-T1; +sample funannotate gene 209044 210553 . - . ID=FUN_000016; +sample funannotate mRNA 209044 210553 . - . ID=FUN_000016-T1;Parent=FUN_000016;product=hypothetical protein; +sample funannotate exon 210548 210553 . - . ID=FUN_000016-T1.exon1;Parent=FUN_000016-T1; +sample funannotate exon 209044 210474 . - . ID=FUN_000016-T1.exon2;Parent=FUN_000016-T1; +sample funannotate CDS 210548 210553 . - 0 ID=FUN_000016-T1.cds;Parent=FUN_000016-T1; +sample funannotate CDS 209044 210474 . - 0 ID=FUN_000016-T1.cds;Parent=FUN_000016-T1; +sample4 funannotate gene 1092 1466 . - . ID=FUN_000017; +sample4 funannotate mRNA 1092 1466 . - . ID=FUN_000017-T1;Parent=FUN_000017;product=hypothetical protein; +sample4 funannotate exon 1092 1466 . - . ID=FUN_000017-T1.exon1;Parent=FUN_000017-T1; +sample4 funannotate CDS 1092 1466 . - 0 ID=FUN_000017-T1.cds;Parent=FUN_000017-T1; +sample4 funannotate gene 2126 3537 . + . ID=FUN_000018; +sample4 funannotate mRNA 2126 3537 . + . ID=FUN_000018-T1;Parent=FUN_000018;product=hypothetical protein; +sample4 funannotate exon 2126 2199 . + . ID=FUN_000018-T1.exon1;Parent=FUN_000018-T1; +sample4 funannotate exon 2258 3224 . + . ID=FUN_000018-T1.exon2;Parent=FUN_000018-T1; +sample4 funannotate exon 3284 3537 . + . ID=FUN_000018-T1.exon3;Parent=FUN_000018-T1; +sample4 funannotate CDS 2126 2199 . + 0 ID=FUN_000018-T1.cds;Parent=FUN_000018-T1; +sample4 funannotate CDS 2258 3224 . + 1 ID=FUN_000018-T1.cds;Parent=FUN_000018-T1; +sample4 funannotate CDS 3284 3537 . + 0 ID=FUN_000018-T1.cds;Parent=FUN_000018-T1;