view test-data/predict_augustus/Genus_species.stats.json @ 5:73428a792541 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8307455ce2bb36981fee509f556ff17c227a9d8a

{
    "format": "annotation",
    "command": "/home/abretaud/miniconda3/envs/__funannotate@1.8.7/bin/funannotate predict --input /tmp/tmpkgev4773/files/c/e/8/dataset_ce85d0fa-1534-47df-8c1e-5f0a5c1b82f0.dat --out output --database /home/abretaud/.planemo/planemo_tmp__fmxm4ll/test-data/funannotate_db --species Genus species --isolate  --strain  --organism other --ploidy 1 --SeqCenter CFMR --SeqAccession 12345 --name FUN_ --numbering 1 --p2g_pident 80 --p2g_prefilter diamond --augustus_species fly --min_training_models 200 --busco_seed_species fly --busco_db insecta --evm-partition-interval 1500 --min_intronlen 10 --max_intronlen 3000 --min_protlen 50 --repeat_filter overlap blast --cpus 1",
    "organism": "Genus_species",
    "software": {
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        "date": "2021-07-21",
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                "date": "2021-07-19",
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            "go": {
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                "date": "2021-07-19",
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            "gene2product": {
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                "date": "2021-06-15",
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    "assembly": {
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    "annotation": {
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        "transcript-level": {
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            "total_exons": 57,
            "total_cds_exons": 57,
            "multiple_exon_transcript": 16,
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            "functional": {
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}