view test-data/predict_scratch/Genus_species.stats.json @ 0:b5ec3983deda draft

"planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
author iuc
date Thu, 26 Aug 2021 06:57:03 +0000
parents
children 258198490c3c
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{
    "format": "annotation",
    "command": "/home/abretaud/miniconda3/envs/__funannotate@1.8.7/bin/funannotate predict --input /tmp/tmpm833xrq1/files/e/1/c/dataset_e1c34c74-e579-4cab-b0ed-5ce938ce4e4b.dat --out output --database /home/abretaud/.planemo/planemo_tmp_yntx6ieu/test-data/funannotate_db --species Genus species --isolate  --strain  --organism other --ploidy 1 --SeqCenter CFMR --SeqAccession 12345 --name FUN_ --numbering 1 --p2g_pident 80 --p2g_prefilter diamond --min_training_models 3 --busco_seed_species fly --busco_db insecta --evm-partition-interval 1500 --min_intronlen 10 --max_intronlen 3000 --min_protlen 50 --repeat_filter overlap blast --cpus 1",
    "organism": "Genus_species",
    "software": {
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        "date": "2021-07-21",
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                "date": "2021-07-19",
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            "go": {
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                "version": "2021-07-02",
                "date": "2021-07-02",
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                "date": "2021-07-19",
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            "gene2product": {
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                "date": "2021-06-15",
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    "assembly": {
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    "annotation": {
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        "avg_gene_length": 1660.69,
        "transcript-level": {
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            "multiple_exon_transcript": 13,
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            "functional": {
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}