Mercurial > repos > iuc > funannotate_compare
annotate test-data/predict_scratch/Genus_species.discrepency.report.txt @ 3:563a19373357 draft
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author | iuc |
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date | Thu, 25 Nov 2021 16:21:20 +0000 |
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1 Discrepancy Report Results |
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2 |
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3 Summary |
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4 DISC_PROTEIN_NAMES:All proteins have same name "hypothetical protein" |
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5 DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all same) |
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6 DISC_FEATURE_COUNT:gene: 16 present |
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7 DISC_FEATURE_COUNT:CDS: 16 present |
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8 DISC_FEATURE_COUNT:mRNA: 16 present |
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9 DISC_COUNT_NUCLEOTIDES:4 nucleotide Bioseqs are present |
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10 JOINED_FEATURES:26 features have joined locations. |
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11 NO_ANNOTATION:2 bioseqs have no features |
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12 DISC_QUALITY_SCORES:Quality scores are missing on all sequences. |
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13 FATAL: DISC_BACTERIAL_PARTIAL_NONEXTENDABLE_PROBLEMS:1 features have partial ends that do not abut the end of the sequence or a gap, and cannot be extended by 3 or fewer nucleotides to do so |
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14 ONCALLER_COMMENT_PRESENT:4 comment descriptors were found (all same) |
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15 MISSING_GENOMEASSEMBLY_COMMENTS:4 bioseqs are missing GenomeAssembly structured comments |
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16 MOLTYPE_NOT_MRNA:4 molecule types are not set as mRNA. |
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17 TECHNIQUE_NOT_TSA:4 technique are not set as TSA |
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18 MISSING_STRUCTURED_COMMENT:4 sequences do not include structured comments. |
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19 MISSING_PROJECT:20 sequences do not include project. |
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20 DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same) |
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21 |
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22 |
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23 Detailed Report |
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24 |
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25 DiscRep_ALL:DISC_PROTEIN_NAMES::All proteins have same name "hypothetical protein" |
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26 |
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27 DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all same) |
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28 DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::4 sources have 'Genus species' for taxname |
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29 DiscRep_ALL:DISC_FEATURE_COUNT::gene: 16 present |
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30 DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 16 present |
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31 DiscRep_ALL:DISC_FEATURE_COUNT::mRNA: 16 present |
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32 DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::4 nucleotide Bioseqs are present |
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33 genome:sample (length 215740) |
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34 genome:sample2 (length 2030) |
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35 genome:sample3 (length 2100) |
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36 genome:sample4 (length 7560) |
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37 |
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38 DiscRep_ALL:JOINED_FEATURES::26 features have joined locations. |
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39 DiscRep_SUB:JOINED_FEATURES::26 features have joined location but no exception |
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40 genome:CDS hypothetical protein (sample4:2126-2199, 2258-3224, 3284->3537) FUN_000016 |
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41 genome:mRNA hypothetical protein (sample4:2126-2199, 2258-3224, 3284->3537) FUN_000016 |
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42 genome:mRNA hypothetical protein (sample:c3142-3138, c3004-2883, c2686-2565) FUN_000002 |
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43 genome:CDS hypothetical protein (sample:c3142-3138, c3004-2883, c2686-2565) FUN_000002 |
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44 genome:mRNA hypothetical protein (sample:c5802-5797, c5539-4937, c4742-4248) FUN_000003 |
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45 genome:CDS hypothetical protein (sample:c5802-5797, c5539-4937, c4742-4248) FUN_000003 |
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46 genome:CDS hypothetical protein (sample:c10664-10657, c10499-8707, c8385-7691) FUN_000004 |
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47 genome:mRNA hypothetical protein (sample:c10664-10657, c10499-8707, c8385-7691) FUN_000004 |
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48 genome:mRNA hypothetical protein (sample:c15214-15209, c14648-14247) FUN_000005 |
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49 genome:CDS hypothetical protein (sample:c15214-15209, c14648-14247) FUN_000005 |
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50 genome:CDS hypothetical protein (sample:15539-15543, 15646-15919, 16485-16619) FUN_000006 |
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51 genome:mRNA hypothetical protein (sample:15539-15543, 15646-15919, 16485-16619) FUN_000006 |
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52 genome:CDS hypothetical protein (sample:c21705-21700, c21515-19638, c19482-18358) FUN_000007 |
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53 genome:mRNA hypothetical protein (sample:c21705-21700, c21515-19638, c19482-18358) FUN_000007 |
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54 genome:CDS hypothetical protein (sample:40223-40396, 40659-41193, 41707-42080, 43409-43609, 43678-44130) FUN_000009 |
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55 genome:mRNA hypothetical protein (sample:40223-40396, 40659-41193, 41707-42080, 43409-43609, 43678-44130) FUN_000009 |
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56 genome:mRNA hypothetical protein (sample:87202-87207, 88054-88320) FUN_000010 |
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57 genome:CDS hypothetical protein (sample:87202-87207, 88054-88320) FUN_000010 |
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58 genome:CDS hypothetical protein (sample:c106221-106216, c104632-104258, c103947-103696, c103618-103229, c103151-102510) FUN_000011 |
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59 genome:mRNA hypothetical protein (sample:c106221-106216, c104632-104258, c103947-103696, c103618-103229, c103151-102510) FUN_000011 |
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60 genome:CDS hypothetical protein (sample:167121-168069, 168722-169212) FUN_000012 |
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61 genome:mRNA hypothetical protein (sample:167121-168069, 168722-169212) FUN_000012 |
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62 genome:CDS hypothetical protein (sample:180262-180267, 180400-180579) FUN_000013 |
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63 genome:mRNA hypothetical protein (sample:180262-180267, 180400-180579) FUN_000013 |
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64 genome:CDS hypothetical protein (sample:c210553-210548, c210474-209053, c208645-208619) FUN_000014 |
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65 genome:mRNA hypothetical protein (sample:c210553-210548, c210474-209053, c208645-208619) FUN_000014 |
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66 |
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67 DiscRep_ALL:NO_ANNOTATION::2 bioseqs have no features |
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68 genome:sample2 (length 2030) |
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69 genome:sample3 (length 2100) |
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70 |
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71 DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences. |
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72 |
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73 FATAL: DiscRep_ALL:DISC_BACTERIAL_PARTIAL_NONEXTENDABLE_PROBLEMS::1 featurepartial ends thands that do not abut the end of the sequence or a gap, and cannot be extended by 3 or fewer nucleotides to do so |
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74 genome:CDS hypothetical protein (sample4:2126-2199, 2258-3224, 3284->3537) FUN_000016 |
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75 |
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76 DiscRep_ALL:ONCALLER_COMMENT_PRESENT::4 comment descriptors were found (all same) |
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77 genome:sample:"Annotated using 1.8.7" |
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78 genome:sample2:"Annotated using 1.8.7" |
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79 genome:sample3:"Annotated using 1.8.7" |
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80 genome:sample4:"Annotated using 1.8.7" |
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81 |
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82 DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::4 bioseqs are missing GenomeAssembly structured comments |
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83 genome:sample (length 215740) |
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84 genome:sample2 (length 2030) |
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85 genome:sample3 (length 2100) |
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86 genome:sample4 (length 7560) |
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87 |
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88 DiscRep_ALL:MOLTYPE_NOT_MRNA::4 molecule types are not set as mRNA. |
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89 genome:sample (length 215740) |
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90 genome:sample2 (length 2030) |
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91 genome:sample3 (length 2100) |
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92 genome:sample4 (length 7560) |
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93 |
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94 DiscRep_ALL:TECHNIQUE_NOT_TSA::4 technique are not set as TSA |
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95 genome:sample (length 215740) |
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96 genome:sample2 (length 2030) |
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97 genome:sample3 (length 2100) |
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98 genome:sample4 (length 7560) |
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99 |
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100 DiscRep_ALL:MISSING_STRUCTURED_COMMENT::4 sequences do not include structured comments. |
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101 genome:sample (length 215740) |
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102 genome:sample2 (length 2030) |
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103 genome:sample3 (length 2100) |
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104 genome:sample4 (length 7560) |
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105 |
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106 DiscRep_ALL:MISSING_PROJECT::20 sequences do not include project. |
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107 genome:sample (length 215740) |
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108 genome:ncbi:FUN_000001-T1 (length 124) |
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109 genome:ncbi:FUN_000002-T1 (length 82) |
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110 genome:ncbi:FUN_000003-T1 (length 367) |
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111 genome:ncbi:FUN_000004-T1 (length 831) |
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112 genome:ncbi:FUN_000005-T1 (length 135) |
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113 genome:ncbi:FUN_000006-T1 (length 137) |
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114 genome:ncbi:FUN_000007-T1 (length 1002) |
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115 genome:ncbi:FUN_000008-T1 (length 278) |
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116 genome:ncbi:FUN_000009-T1 (length 578) |
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117 genome:ncbi:FUN_000010-T1 (length 90) |
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118 genome:ncbi:FUN_000011-T1 (length 554) |
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119 genome:ncbi:FUN_000012-T1 (length 479) |
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120 genome:ncbi:FUN_000013-T1 (length 61) |
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121 genome:ncbi:FUN_000014-T1 (length 484) |
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122 genome:sample2 (length 2030) |
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123 genome:sample3 (length 2100) |
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124 genome:sample4 (length 7560) |
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125 genome:ncbi:FUN_000015-T1 (length 124) |
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126 genome:ncbi:FUN_000016-T1 (length 432) |
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127 |
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128 DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same) |
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129 DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing) |
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130 DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::4 Molinfos are missing field technique |
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131 genome:sample (length 215740) |
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132 genome:sample2 (length 2030) |
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133 genome:sample3 (length 2100) |
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134 genome:sample4 (length 7560) |
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135 |