Mercurial > repos > iuc > funannotate_compare

annotate README.md @ 10:57c6718cbfcc draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 737d7e9a31c9d340a38ddfef3ac20847989718e0
author iuc
date Sun, 11 Feb 2024 00:09:45 +0000
parents 857f7ac611e1
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
1 # Funannotate
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
2
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
3 Funannotate can use GeneMark to predict gene, but due to licensing issues, we are not allowed to distribute GeneMark automatically.
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
4
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
5 If you want to use it, the Galaxy administrator needs to install it GeneMark following the instructions on https://github.com/nextgenusfs/funannotate, and set the `GENEMARK_PATH` variable on the job destination.