Mercurial > repos > iuc > funannotate_compare

annotate test-data/predict_augustus/Genus_species.discrepency.report.txt @ 11:0418d28136de draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 9e3708d04faea0f1be4ea8918e859d6f2c7eb31d
author iuc
date Wed, 26 Jun 2024 09:38:43 +0000
parents 857f7ac611e1
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
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1 Discrepancy Report Results
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2
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3 Summary
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4 DISC_PROTEIN_NAMES:All proteins have same name "hypothetical protein"
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5 DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all same)
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6 DISC_FEATURE_COUNT:gene: 18 present
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7 DISC_FEATURE_COUNT:CDS: 18 present
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8 DISC_FEATURE_COUNT:mRNA: 18 present
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9 DISC_COUNT_NUCLEOTIDES:4 nucleotide Bioseqs are present
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10 JOINED_FEATURES:32 features have joined locations.
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11 NO_ANNOTATION:2 bioseqs have no features
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12 DISC_QUALITY_SCORES:Quality scores are missing on all sequences.
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13 ONCALLER_COMMENT_PRESENT:4 comment descriptors were found (all same)
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14 MISSING_GENOMEASSEMBLY_COMMENTS:4 bioseqs are missing GenomeAssembly structured comments
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15 MOLTYPE_NOT_MRNA:4 molecule types are not set as mRNA.
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16 TECHNIQUE_NOT_TSA:4 technique are not set as TSA
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17 MISSING_STRUCTURED_COMMENT:4 sequences do not include structured comments.
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18 MISSING_PROJECT:22 sequences do not include project.
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19 DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same)
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20
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21
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22 Detailed Report
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23
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24 DiscRep_ALL:DISC_PROTEIN_NAMES::All proteins have same name "hypothetical protein"
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25
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26 DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all same)
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27 DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::4 sources have 'Genus species' for taxname
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28 DiscRep_ALL:DISC_FEATURE_COUNT::gene: 18 present
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29 DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 18 present
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30 DiscRep_ALL:DISC_FEATURE_COUNT::mRNA: 18 present
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31 DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::4 nucleotide Bioseqs are present
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32 genome:sample (length 215740)
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33 genome:sample2 (length 2030)
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34 genome:sample3 (length 2100)
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35 genome:sample4 (length 7560)
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36
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37 DiscRep_ALL:JOINED_FEATURES::32 features have joined locations.
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38 DiscRep_SUB:JOINED_FEATURES::32 features have joined location but no exception
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39 genome:CDS hypothetical protein (sample:2126-2199, 2258-3224, 3284-3490, 3549-3863) FUN_000002
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
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40 genome:mRNA hypothetical protein (sample4:2126-2199, 2258-3224, 3284-3490, 3549-3863) FUN_000017
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41 genome:CDS hypothetical protein (sample4:2126-2199, 2258-3224, 3284-3490, 3549-3863) FUN_000017
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42 genome:mRNA hypothetical protein (sample:2126-2199, 2258-3224, 3284-3490, 3549-3863) FUN_000002
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43 genome:CDS hypothetical protein (sample4:c5494-4930, c4759-4248) FUN_000018
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44 genome:mRNA hypothetical protein (sample4:c5494-4930, c4759-4248) FUN_000018
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45 genome:mRNA hypothetical protein (sample:c5802-5797, c5539-4883) FUN_000003
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46 genome:CDS hypothetical protein (sample:c5802-5797, c5539-4883) FUN_000003
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47 genome:CDS hypothetical protein (sample:c10557-10549, c10462-8696) FUN_000004
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48 genome:mRNA hypothetical protein (sample:c10557-10549, c10462-8696) FUN_000004
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49 genome:mRNA hypothetical protein (sample:c15214-15209, c14648-14247) FUN_000005
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50 genome:CDS hypothetical protein (sample:c15214-15209, c14648-14247) FUN_000005
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51 genome:CDS hypothetical protein (sample:c21705-21700, c21515-19533) FUN_000006
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52 genome:mRNA hypothetical protein (sample:c21705-21700, c21515-19533) FUN_000006
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53 genome:CDS hypothetical protein (sample:c35679-35675, c35655-35648, c35594-34843) FUN_000007
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54 genome:mRNA hypothetical protein (sample:c35679-35675, c35655-35648, c35594-34843) FUN_000007
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55 genome:CDS hypothetical protein (sample:40223-40396, 40659-41234) FUN_000008
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56 genome:mRNA hypothetical protein (sample:40223-40396, 40659-41234) FUN_000008
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57 genome:mRNA hypothetical protein (sample:41267-41274, 41437-41444, 41707-42107) FUN_000009
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58 genome:CDS hypothetical protein (sample:41267-41274, 41437-41444, 41707-42107) FUN_000009
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59 genome:CDS hypothetical protein (sample:87202-87207, 88054-88320) FUN_000010
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60 genome:mRNA hypothetical protein (sample:87202-87207, 88054-88320) FUN_000010
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61 genome:CDS hypothetical protein (sample:94727-94732, 94873-95016, 95449-95583) FUN_000011
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62 genome:mRNA hypothetical protein (sample:94727-94732, 94873-95016, 95449-95583) FUN_000011
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
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63 genome:CDS hypothetical protein (sample:133134-133142, 133209-134539, 134668-135510, 135569-136346) FUN_000012
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64 genome:mRNA hypothetical protein (sample:133134-133142, 133209-134539, 134668-135510, 135569-136346) FUN_000012
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65 genome:CDS hypothetical protein (sample:144294-144551, 149012-149244, 149367-149588, 149654-149897, 149952-150112, 150174-150248, 151966-152072, 152314-152429, 152496-152751, 153651-159010, 159150-164491, 167135-168360, 168722-169208, 169350-169416) FUN_000013
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66 genome:mRNA hypothetical protein (sample:144294-144551, 149012-149244, 149367-149588, 149654-149897, 149952-150112, 150174-150248, 151966-152072, 152314-152429, 152496-152751, 153651-159010, 159150-164491, 167135-168360, 168722-169208, 169350-169416) FUN_000013
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67 genome:CDS hypothetical protein (sample:192049-192067, 193549-193658, 194041-194455, 194518-194669) FUN_000014
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68 genome:mRNA hypothetical protein (sample:192049-192067, 193549-193658, 194041-194455, 194518-194669) FUN_000014
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69 genome:CDS hypothetical protein (sample:c210553-210548, c210474-209044) FUN_000015
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70 genome:mRNA hypothetical protein (sample:c210553-210548, c210474-209044) FUN_000015
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71
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72 DiscRep_ALL:NO_ANNOTATION::2 bioseqs have no features
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73 genome:sample2 (length 2030)
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74 genome:sample3 (length 2100)
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75
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76 DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences.
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77
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78 DiscRep_ALL:ONCALLER_COMMENT_PRESENT::4 comment descriptors were found (all same)
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79 genome:sample:"Annotated using 1.8.7"
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80 genome:sample2:"Annotated using 1.8.7"
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81 genome:sample3:"Annotated using 1.8.7"
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82 genome:sample4:"Annotated using 1.8.7"
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83
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84 DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::4 bioseqs are missing GenomeAssembly structured comments
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85 genome:sample (length 215740)
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86 genome:sample2 (length 2030)
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87 genome:sample3 (length 2100)
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88 genome:sample4 (length 7560)
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89
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90 DiscRep_ALL:MOLTYPE_NOT_MRNA::4 molecule types are not set as mRNA.
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
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91 genome:sample (length 215740)
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92 genome:sample2 (length 2030)
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iuc
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93 genome:sample3 (length 2100)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
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94 genome:sample4 (length 7560)
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95
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96 DiscRep_ALL:TECHNIQUE_NOT_TSA::4 technique are not set as TSA
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97 genome:sample (length 215740)
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98 genome:sample2 (length 2030)
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99 genome:sample3 (length 2100)
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100 genome:sample4 (length 7560)
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diff changeset
101
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
102 DiscRep_ALL:MISSING_STRUCTURED_COMMENT::4 sequences do not include structured comments.
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
103 genome:sample (length 215740)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
104 genome:sample2 (length 2030)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
105 genome:sample3 (length 2100)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
106 genome:sample4 (length 7560)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
107
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
108 DiscRep_ALL:MISSING_PROJECT::22 sequences do not include project.
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
109 genome:sample (length 215740)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
110 genome:ncbi:FUN_000001-T1 (length 124)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
111 genome:ncbi:FUN_000002-T1 (length 520)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
112 genome:ncbi:FUN_000003-T1 (length 220)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
113 genome:ncbi:FUN_000004-T1 (length 591)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
114 genome:ncbi:FUN_000005-T1 (length 135)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
115 genome:ncbi:FUN_000006-T1 (length 662)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
116 genome:ncbi:FUN_000007-T1 (length 254)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
117 genome:ncbi:FUN_000008-T1 (length 249)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
118 genome:ncbi:FUN_000009-T1 (length 138)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
119 genome:ncbi:FUN_000010-T1 (length 90)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
120 genome:ncbi:FUN_000011-T1 (length 94)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
121 genome:ncbi:FUN_000012-T1 (length 986)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
122 genome:ncbi:FUN_000013-T1 (length 4717)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
123 genome:ncbi:FUN_000014-T1 (length 231)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
124 genome:ncbi:FUN_000015-T1 (length 478)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
125 genome:sample2 (length 2030)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
126 genome:sample3 (length 2100)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
127 genome:sample4 (length 7560)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
128 genome:ncbi:FUN_000016-T1 (length 124)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
129 genome:ncbi:FUN_000017-T1 (length 520)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
130 genome:ncbi:FUN_000018-T1 (length 358)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
131
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
132 DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
133 DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
134 DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::4 Molinfos are missing field technique
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
135 genome:sample (length 215740)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
136 genome:sample2 (length 2030)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
137 genome:sample3 (length 2100)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
138 genome:sample4 (length 7560)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
139