comparison funannotate_compare.xml @ 2:3187e8a44739 draft

"planemo upload commit 9cbeba115a6e13dd4c007065b7d77dcb400f72fb"

1:e2e43248dd18

            <when value="iqtree" />
            <when value="raxml">
                <param argument="--bootstrap" type="integer" value="100" label="Number of boostrap replicates to run with RAxML" />
            </when>
        </conditional>

        <!-- Need this to change path in the test funannotate_db -->
        <param type="hidden" name="uglyTestingHack" value="" />
    </inputs>
    <outputs>
        <data name='output' format='html' label="${tool.name} on ${on_string}: report" />
    </outputs>
    <tests>
        <test>
            <param name="input" value="compare/Genus_species.gbk,compare/Other_species.gbk,compare/Other_beast.gbk,compare/Yet_another.gbk" />
            <param name="database" value="2021-07-20-120000" />
            <param name="outputs" value="gbk" />
            <conditional name="ml">
                <param name="ml_method" value="raxml" />
            </conditional>
            <output name="output">
                <assert_contents>

2:3187e8a44739

            <when value="iqtree" />
            <when value="raxml">
                <param argument="--bootstrap" type="integer" value="100" label="Number of boostrap replicates to run with RAxML" />
            </when>
        </conditional>
    </inputs>
    <outputs>
        <data name='output' format='html' label="${tool.name} on ${on_string}: report" />
    </outputs>
    <tests>
        <test>
            <param name="input" value="compare/Genus_species.gbk,compare/Other_species.gbk,compare/Other_beast.gbk,compare/Yet_another.gbk" />
            <param name="database" value="2021-07-20-120000" />
            <conditional name="ml">
                <param name="ml_method" value="raxml" />
            </conditional>
            <output name="output">
                <assert_contents>