Mercurial > repos > iuc > funannotate_compare

diff funannotate_compare.xml @ 3:563a19373357 draft

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"planemo upload commit 4ea03fe4266665334b99b4a4d34e5845fe03d383"
author iuc
date Thu, 25 Nov 2021 16:21:20 +0000
parents 3187e8a44739
children 494f0bb4a993
line wrap: on
line diff
--- a/funannotate_compare.xml	Thu Nov 25 09:43:48 2021 +0000
+++ b/funannotate_compare.xml	Thu Nov 25 16:21:20 2021 +0000
@@ -104,6 +104,34 @@
                 </assert_contents>
             </output>
         </test>
+        <test>
+            <param name="input" value="compare/Genus_species.gbk,compare/Other_species.gbk,compare/Other_beast.gbk,compare/Yet_another.gbk" />
+            <param name="database" value="2021-07-20-120000" />
+            <param name="run_dnds" value="estimate" />
+            <param name="outputs" value="gbk" />
+            <conditional name="ml">
+                <param name="ml_method" value="raxml" />
+            </conditional>
+            <output name="output">
+                <assert_contents>
+                    <has_text text="Report generated on:" />
+                </assert_contents>
+            </output>
+        </test>
+        <test>
+            <param name="input" value="compare/Genus_species.gbk,compare/Other_species.gbk,compare/Other_beast.gbk,compare/Yet_another.gbk" />
+            <param name="database" value="2021-07-20-120000" />
+            <param name="run_dnds" value="full" />
+            <param name="outputs" value="gbk" />
+            <conditional name="ml">
+                <param name="ml_method" value="raxml" />
+            </conditional>
+            <output name="output">
+                <assert_contents>
+                    <has_text text="Report generated on:" />
+                </assert_contents>
+            </output>
+        </test>
     </tests>
     <help><![CDATA[
 Funannotate_ compare