diff test-data/predict_scratch/Genus_species.stats.json @ 5:a7ce2601500c draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 2589d2785ca90160a22a5fe14e03311e189ea51d

--- a/test-data/predict_scratch/Genus_species.stats.json	Sun Jan 22 17:32:51 2023 +0000
+++ b/test-data/predict_scratch/Genus_species.stats.json	Thu Apr 13 17:13:56 2023 +0000
@@ -1,11 +1,11 @@
 {
     "format": "annotation",
-    "command": "/home/abretaud/miniconda3/envs/__funannotate@1.8.7/bin/funannotate predict --input /tmp/tmpm833xrq1/files/e/1/c/dataset_e1c34c74-e579-4cab-b0ed-5ce938ce4e4b.dat --out output --database /home/abretaud/.planemo/planemo_tmp_yntx6ieu/test-data/funannotate_db --species Genus species --isolate  --strain  --organism other --ploidy 1 --SeqCenter CFMR --SeqAccession 12345 --name FUN_ --numbering 1 --p2g_pident 80 --p2g_prefilter diamond --min_training_models 3 --busco_seed_species fly --busco_db insecta --evm-partition-interval 1500 --min_intronlen 10 --max_intronlen 3000 --min_protlen 50 --repeat_filter overlap blast --cpus 1",
+    "command": "/home/abretaud/miniconda3/envs/__funannotate@1.8.15/bin/funannotate predict --input input/input.fasta --out output --database /home/abretaud/git/iuc_tools/tools/funannotate/test-data/funannotate_db --species Genus species --isolate  --strain  --organism other --ploidy 1 --SeqCenter CFMR --SeqAccession 12345 --name FUN_ --numbering 1 --p2g_pident 80 --p2g_prefilter diamond --busco_seed_species fly --busco_db insecta --min_training_models 3 --evm-partition-interval 1500 --min_intronlen 10 --max_intronlen 3000 --min_protlen 50 --repeat_filter overlap blast --cpus 1",
     "organism": "Genus_species",
     "software": {
         "name": "funannotate",
-        "version": "1.8.7",
-        "date": "2021-07-21",
+        "version": "1.8.15",
+        "date": "2023-04-13",
         "resources": {
             "merops": {
                 "type": "diamond",
@@ -71,38 +71,38 @@
     },
     "assembly": {
         "num_contigs": 4,
-        "length": 227430,
-        "mean_length": 56857.5,
-        "N50": 215740,
+        "length": 732270,
+        "mean_length": 183067.5,
+        "N50": 720580,
         "L50": 1,
-        "N90": 215740,
+        "N90": 720580,
         "L90": 1,
-        "GC_content": 42.86
+        "GC_content": 43.15
     },
     "annotation": {
-        "genes": 16,
+        "genes": 70,
         "common_name": 0,
-        "mRNA": 16,
-        "tRNA": 0,
+        "mRNA": 69,
+        "tRNA": 1,
         "ncRNA": 0,
         "rRNA": 0,
-        "avg_gene_length": 1660.69,
+        "avg_gene_length": 1544.77,
         "transcript-level": {
-            "CDS_transcripts": 16,
+            "CDS_transcripts": 69,
             "CDS_five_utr": 0,
             "CDS_three_utr": 0,
-            "CDS_no_utr": 16,
+            "CDS_no_utr": 69,
             "CDS_five_three_utr": 0,
-            "CDS_complete": 15,
+            "CDS_complete": 68,
             "CDS_no-start": 0,
             "CDS_no-stop": 1,
             "CDS_no-start_no-stop": 0,
-            "total_exons": 42,
-            "total_cds_exons": 42,
-            "multiple_exon_transcript": 13,
-            "single_exon_transcript": 3,
-            "avg_exon_length": 402.36,
-            "avg_protein_length": 359.81,
+            "total_exons": 209,
+            "total_cds_exons": 209,
+            "multiple_exon_transcript": 58,
+            "single_exon_transcript": 11,
+            "avg_exon_length": 362.67,
+            "avg_protein_length": 393.62,
             "functional": {
                 "go_terms": 0,
                 "interproscan": 0,
@@ -113,7 +113,7 @@
                 "busco": 0,
                 "secretion": 0
             },
-            "pct_exon_overlap_protein_evidence": 11.9
+            "pct_exon_overlap_protein_evidence": 3.81
         }
     }
 }
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