view test-data/predict_bam/Genus_species.stats.json @ 4:494f0bb4a993 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8307455ce2bb36981fee509f556ff17c227a9d8a

{
    "format": "annotation",
    "command": "/home/abretaud/miniconda3/envs/__funannotate@1.8.7/bin/funannotate predict --input /tmp/tmp2z22js7e/files/c/c/3/dataset_cc3f66b5-ec9b-4669-93d6-4ddeac0e33c1.dat --out output --database /home/abretaud/.planemo/planemo_tmp_z_14xthq/test-data/funannotate_db --species Genus species --isolate  --strain  --organism other --ploidy 1 --SeqCenter CFMR --SeqAccession 12345 --name FUN_ --numbering 1 --rna_bam /tmp/tmp2z22js7e/files/9/6/5/dataset_965b5091-b838-4f4a-8ec8-9fb84c12cdc5.dat --transcript_evidence /tmp/tmp2z22js7e/files/d/a/e/dataset_daea4ce7-3191-40eb-ad83-b35e9e058d46.dat --p2g_pident 80 --p2g_prefilter diamond --min_training_models 3 --busco_seed_species fly --busco_db insecta --evm-partition-interval 1500 --min_intronlen 10 --max_intronlen 3000 --min_protlen 50 --repeat_filter overlap blast --cpus 1",
    "organism": "Genus_species",
    "software": {
        "name": "funannotate",
        "version": "1.8.7",
        "date": "2021-07-22",
        "resources": {
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            "dbCAN": {
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                "date": "2021-07-19",
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            "go": {
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                "date": "2021-07-02",
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            "busco_outgroups": {
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                "date": "2021-07-19",
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            },
            "gene2product": {
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                "date": "2021-06-15",
                "num-records": "34039"
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        }
    },
    "assembly": {
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        "length": 227430,
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        "N50": 215740,
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        "GC_content": 42.86
    },
    "annotation": {
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        "tRNA": 0,
        "ncRNA": 0,
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        "avg_gene_length": 2775.33,
        "transcript-level": {
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            "CDS_five_utr": 0,
            "CDS_three_utr": 0,
            "CDS_no_utr": 18,
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            "CDS_complete": 16,
            "CDS_no-start": 1,
            "CDS_no-stop": 1,
            "CDS_no-start_no-stop": 0,
            "total_exons": 54,
            "total_cds_exons": 54,
            "multiple_exon_transcript": 15,
            "single_exon_transcript": 3,
            "avg_exon_length": 563.63,
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            "functional": {
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                "cazyme": 0,
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}