annotate macros.xml @ 14:3cc3ef448854 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 0b6712733bce2e4ec6b276a6dec9c7b4bff5a5cd

1 <?xml version="1.0"?>
2 <macros>
3     <token name="@TOOL_VERSION@">1.8.17</token>
4     <token name="@VERSION_SUFFIX@">0</token>
5     <xml name="biotools">
6         <xrefs>
7             <xref type="bio.tools">
8                 funannotate
9             </xref>
10         </xrefs>
11     </xml>
12     <xml name="requirements">
13         <requirement type="package" version="@TOOL_VERSION@">funannotate</requirement>
14     </xml>
15 
16     <xml name="citations">
17         <citations>
18             <citation type="doi">10.5281/zenodo.4054262</citation>
19         </citations>
20     </xml>
21 
22     <xml name="busco_species">
23         <options from_data_table="funannotate_options">
24             <column name="value" index="0" />
25             <column name="name" index="1" />
26             <filter type="static_value" column="2" value="busco_db"/>
27             <filter type="param_value" column="3" ref="database"/>
28             <filter type="add_value" value="dikarya" name="Dikarya" index="0"/> <!-- this sets the default -->
29         </options>
30     </xml>
31 
32 
33     <xml name="busco_seeds">
34         <options from_data_table="funannotate_options">
35             <column name="value" index="0" />
36             <column name="name" index="1" />
37             <filter type="static_value" column="2" value="trained_species"/>
38             <filter type="param_value" column="3" ref="database"/>
39             <yield/>
40         </options>
41     </xml>
42 </macros>