annotate README.md @ 3:73909ee8162e draft

"planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
author iuc
date Thu, 18 Nov 2021 21:59:41 +0000
parents 40b87aef5241
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
40b87aef5241 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
1 # Funannotate
40b87aef5241 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
2
40b87aef5241 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
3 Funannotate can use GeneMark to predict gene, but due to licensing issues, we are not allowed to distribute GeneMark automatically.
40b87aef5241 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
4
40b87aef5241 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
5 If you want to use it, the Galaxy administrator needs to install it GeneMark following the instructions on https://github.com/nextgenusfs/funannotate, and set the `GENEMARK_PATH` variable on the job destination.