Mercurial > repos > iuc > funannotate_predict
annotate test-data/predict_augustus/Genus_species.stats.json @ 8:f31125bb85ea draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 2c4f8172c3f452e1119b3d528c97da382750adeb
author | iuc |
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date | Tue, 25 Apr 2023 18:32:42 +0000 |
parents | 40b87aef5241 |
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1 { |
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2 "format": "annotation", |
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3 "command": "/home/abretaud/miniconda3/envs/__funannotate@1.8.7/bin/funannotate predict --input /tmp/tmpkgev4773/files/c/e/8/dataset_ce85d0fa-1534-47df-8c1e-5f0a5c1b82f0.dat --out output --database /home/abretaud/.planemo/planemo_tmp__fmxm4ll/test-data/funannotate_db --species Genus species --isolate --strain --organism other --ploidy 1 --SeqCenter CFMR --SeqAccession 12345 --name FUN_ --numbering 1 --p2g_pident 80 --p2g_prefilter diamond --augustus_species fly --min_training_models 200 --busco_seed_species fly --busco_db insecta --evm-partition-interval 1500 --min_intronlen 10 --max_intronlen 3000 --min_protlen 50 --repeat_filter overlap blast --cpus 1", |
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4 "organism": "Genus_species", |
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5 "software": { |
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6 "name": "funannotate", |
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7 "version": "1.8.7", |
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8 "date": "2021-07-21", |
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9 "resources": { |
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12 "version": "12.0", |
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13 "date": "2017-10-04", |
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14 "num-records": "5009" |
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62 "num-records": "8" |
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114 "secretion": 0 |
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115 }, |
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116 "pct_exon_overlap_protein_evidence": 17.54 |
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117 } |
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"planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
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118 } |
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"planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
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119 } |