Mercurial > repos > iuc > funannotate_predict

annotate README.md @ 12:4b96ced19f75 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 9e3708d04faea0f1be4ea8918e859d6f2c7eb31d
author iuc
date Wed, 26 Jun 2024 09:39:31 +0000
parents 40b87aef5241
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
40b87aef5241 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
1 # Funannotate
40b87aef5241 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
2
40b87aef5241 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
3 Funannotate can use GeneMark to predict gene, but due to licensing issues, we are not allowed to distribute GeneMark automatically.
40b87aef5241 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
4
40b87aef5241 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
5 If you want to use it, the Galaxy administrator needs to install it GeneMark following the instructions on https://github.com/nextgenusfs/funannotate, and set the `GENEMARK_PATH` variable on the job destination.