Mercurial > repos > iuc > funannotate_predict

comparison test-data/predict_scratch/Genus_species.discrepency.report.txt @ 7:51b6ee65ef7f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 2589d2785ca90160a22a5fe14e03311e189ea51d
author iuc
date Thu, 13 Apr 2023 17:16:35 +0000
parents 40b87aef5241
children
comparison
equal deleted inserted replaced
6:7abc5f6dd595 7:51b6ee65ef7f
1 Discrepancy Report Results 1 Discrepancy Report Results
2 2
3 Summary 3 Summary
4 DISC_PROTEIN_NAMES:All proteins have same name "hypothetical protein" 4 DISC_PROTEIN_NAMES:All proteins have same name "hypothetical protein"
5 DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all same) 5 DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all same)
6 DISC_FEATURE_COUNT:gene: 16 present 6 DISC_FEATURE_COUNT:gene: 70 present
7 DISC_FEATURE_COUNT:CDS: 16 present 7 DISC_FEATURE_COUNT:CDS: 69 present
8 DISC_FEATURE_COUNT:mRNA: 16 present 8 DISC_FEATURE_COUNT:mRNA: 69 present
9 DISC_FEATURE_COUNT:tRNA: 1 present
9 DISC_COUNT_NUCLEOTIDES:4 nucleotide Bioseqs are present 10 DISC_COUNT_NUCLEOTIDES:4 nucleotide Bioseqs are present
10 JOINED_FEATURES:26 features have joined locations. 11 JOINED_FEATURES:116 features have joined locations.
11 NO_ANNOTATION:2 bioseqs have no features 12 NO_ANNOTATION:2 bioseqs have no features
12 DISC_QUALITY_SCORES:Quality scores are missing on all sequences. 13 DISC_QUALITY_SCORES:Quality scores are missing on all sequences.
13 FATAL: DISC_BACTERIAL_PARTIAL_NONEXTENDABLE_PROBLEMS:1 features have partial ends that do not abut the end of the sequence or a gap, and cannot be extended by 3 or fewer nucleotides to do so 14 FATAL: DISC_BACTERIAL_PARTIAL_NONEXTENDABLE_PROBLEMS:1 features have partial ends that do not abut the end of the sequence or a gap, and cannot be extended by 3 or fewer nucleotides to do so
14 ONCALLER_COMMENT_PRESENT:4 comment descriptors were found (all same) 15 ONCALLER_COMMENT_PRESENT:4 comment descriptors were found (all same)
15 MISSING_GENOMEASSEMBLY_COMMENTS:4 bioseqs are missing GenomeAssembly structured comments 16 MISSING_GENOMEASSEMBLY_COMMENTS:4 bioseqs are missing GenomeAssembly structured comments
16 MOLTYPE_NOT_MRNA:4 molecule types are not set as mRNA. 17 MOLTYPE_NOT_MRNA:4 molecule types are not set as mRNA.
17 TECHNIQUE_NOT_TSA:4 technique are not set as TSA 18 TECHNIQUE_NOT_TSA:4 technique are not set as TSA
18 MISSING_STRUCTURED_COMMENT:4 sequences do not include structured comments. 19 MISSING_STRUCTURED_COMMENT:4 sequences do not include structured comments.
19 MISSING_PROJECT:20 sequences do not include project. 20 MISSING_PROJECT:73 sequences do not include project.
20 DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same) 21 DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same)
21 22
22 23
23 Detailed Report 24 Detailed Report
24 25
25 DiscRep_ALL:DISC_PROTEIN_NAMES::All proteins have same name "hypothetical protein" 26 DiscRep_ALL:DISC_PROTEIN_NAMES::All proteins have same name "hypothetical protein"
26 27
27 DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all same) 28 DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all same)
28 DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::4 sources have 'Genus species' for taxname 29 DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::4 sources have 'Genus species' for taxname
29 DiscRep_ALL:DISC_FEATURE_COUNT::gene: 16 present 30 DiscRep_ALL:DISC_FEATURE_COUNT::gene: 70 present
30 DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 16 present 31 DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 69 present
31 DiscRep_ALL:DISC_FEATURE_COUNT::mRNA: 16 present 32 DiscRep_ALL:DISC_FEATURE_COUNT::mRNA: 69 present
33 DiscRep_ALL:DISC_FEATURE_COUNT::tRNA: 1 present
32 DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::4 nucleotide Bioseqs are present 34 DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::4 nucleotide Bioseqs are present
33 genome:sample (length 215740) 35 genome:sample (length 720580)
34 genome:sample2 (length 2030) 36 genome:sample2 (length 2030)
35 genome:sample3 (length 2100) 37 genome:sample3 (length 2100)
36 genome:sample4 (length 7560) 38 genome:sample4 (length 7560)
37 39
38 DiscRep_ALL:JOINED_FEATURES::26 features have joined locations. 40 DiscRep_ALL:JOINED_FEATURES::116 features have joined locations.
39 DiscRep_SUB:JOINED_FEATURES::26 features have joined location but no exception 41 DiscRep_SUB:JOINED_FEATURES::116 features have joined location but no exception
40 genome:CDS hypothetical protein (sample4:2126-2199, 2258-3224, 3284->3537) FUN_000016 42 genome:CDS hypothetical protein (sample4:2126-2199, 2258-3224, 3284-3490, 3727-3855) FUN_000069
41 genome:mRNA hypothetical protein (sample4:2126-2199, 2258-3224, 3284->3537) FUN_000016 43 genome:mRNA hypothetical protein (sample4:2126-2199, 2258-3224, 3284-3490, 3727-3855) FUN_000069
42 genome:mRNA hypothetical protein (sample:c3142-3138, c3004-2883, c2686-2565) FUN_000002 44 genome:mRNA hypothetical protein (sample:2126-2199, 2258-3224, 3284-3490, 3727-3855) FUN_000001
43 genome:CDS hypothetical protein (sample:c3142-3138, c3004-2883, c2686-2565) FUN_000002 45 genome:CDS hypothetical protein (sample:2126-2199, 2258-3224, 3284-3490, 3727-3855) FUN_000001
44 genome:mRNA hypothetical protein (sample:c5802-5797, c5539-4937, c4742-4248) FUN_000003 46 genome:CDS hypothetical protein (sample:c5671-5666, c5539-4930, c4759-4248) FUN_000002
45 genome:CDS hypothetical protein (sample:c5802-5797, c5539-4937, c4742-4248) FUN_000003 47 genome:mRNA hypothetical protein (sample:c5671-5666, c5539-4930, c4759-4248) FUN_000002
46 genome:CDS hypothetical protein (sample:c10664-10657, c10499-8707, c8385-7691) FUN_000004 48 genome:CDS hypothetical protein (sample4:c5671-5666, c5539-4930, c4759-4248) FUN_000070
47 genome:mRNA hypothetical protein (sample:c10664-10657, c10499-8707, c8385-7691) FUN_000004 49 genome:mRNA hypothetical protein (sample4:c5671-5666, c5539-4930, c4759-4248) FUN_000070
48 genome:mRNA hypothetical protein (sample:c15214-15209, c14648-14247) FUN_000005 50 genome:CDS hypothetical protein (sample:c11104-10853, c10794-10663, c10501-8707, c8385-7691) FUN_000003
49 genome:CDS hypothetical protein (sample:c15214-15209, c14648-14247) FUN_000005 51 genome:mRNA hypothetical protein (sample:c11104-10853, c10794-10663, c10501-8707, c8385-7691) FUN_000003
50 genome:CDS hypothetical protein (sample:15539-15543, 15646-15919, 16485-16619) FUN_000006 52 genome:CDS hypothetical protein (sample:c21523-21517, c21454-19638, c19482-18513, c18490-18378, c18274-18215, c18099-17296, c17188-15353, c15289-15101, c14995-14794, c14659-14247) FUN_000004
51 genome:mRNA hypothetical protein (sample:15539-15543, 15646-15919, 16485-16619) FUN_000006 53 genome:mRNA hypothetical protein (sample:c21523-21517, c21454-19638, c19482-18513, c18490-18378, c18274-18215, c18099-17296, c17188-15353, c15289-15101, c14995-14794, c14659-14247) FUN_000004
52 genome:CDS hypothetical protein (sample:c21705-21700, c21515-19638, c19482-18358) FUN_000007 54 genome:mRNA hypothetical protein (sample:c27475-27470, c27042-26112, c25838-25828) FUN_000005
53 genome:mRNA hypothetical protein (sample:c21705-21700, c21515-19638, c19482-18358) FUN_000007 55 genome:CDS hypothetical protein (sample:c27475-27470, c27042-26112, c25838-25828) FUN_000005
54 genome:CDS hypothetical protein (sample:40223-40396, 40659-41193, 41707-42080, 43409-43609, 43678-44130) FUN_000009 56 genome:CDS hypothetical protein (sample:40223-40226, 40239-40396, 40659-41193, 41707-42107) FUN_000007
55 genome:mRNA hypothetical protein (sample:40223-40396, 40659-41193, 41707-42080, 43409-43609, 43678-44130) FUN_000009 57 genome:mRNA hypothetical protein (sample:40223-40226, 40239-40396, 40659-41193, 41707-42107) FUN_000007
56 genome:mRNA hypothetical protein (sample:87202-87207, 88054-88320) FUN_000010 58 genome:CDS hypothetical protein (sample:43455-43462, 43623-44130) FUN_000008
57 genome:CDS hypothetical protein (sample:87202-87207, 88054-88320) FUN_000010 59 genome:mRNA hypothetical protein (sample:43455-43462, 43623-44130) FUN_000008
58 genome:CDS hypothetical protein (sample:c106221-106216, c104632-104258, c103947-103696, c103618-103229, c103151-102510) FUN_000011 60 genome:CDS hypothetical protein (sample:c57154-57146, c56873-56484) FUN_000009
59 genome:mRNA hypothetical protein (sample:c106221-106216, c104632-104258, c103947-103696, c103618-103229, c103151-102510) FUN_000011 61 genome:mRNA hypothetical protein (sample:c57154-57146, c56873-56484) FUN_000009
60 genome:CDS hypothetical protein (sample:167121-168069, 168722-169212) FUN_000012 62 genome:mRNA hypothetical protein (sample:79168-79175, 79510-80518) FUN_000010
61 genome:mRNA hypothetical protein (sample:167121-168069, 168722-169212) FUN_000012 63 genome:CDS hypothetical protein (sample:79168-79175, 79510-80518) FUN_000010
62 genome:CDS hypothetical protein (sample:180262-180267, 180400-180579) FUN_000013 64 genome:mRNA hypothetical protein (sample:94445-94448, 94563-94732, 94873-95583) FUN_000011
63 genome:mRNA hypothetical protein (sample:180262-180267, 180400-180579) FUN_000013 65 genome:CDS hypothetical protein (sample:94445-94448, 94563-94732, 94873-95583) FUN_000011
64 genome:CDS hypothetical protein (sample:c210553-210548, c210474-209053, c208645-208619) FUN_000014 66 genome:mRNA hypothetical protein (sample:133134-133142, 133209-134216, 134234-134242) FUN_000012
65 genome:mRNA hypothetical protein (sample:c210553-210548, c210474-209053, c208645-208619) FUN_000014 67 genome:CDS hypothetical protein (sample:133134-133142, 133209-134216, 134234-134242) FUN_000012
68 genome:mRNA hypothetical protein (sample:134353-134357, 134396-134539, 134668-135510, 135569-136346) FUN_000013
69 genome:CDS hypothetical protein (sample:134353-134357, 134396-134539, 134668-135510, 135569-136346) FUN_000013
70 genome:mRNA hypothetical protein (sample:c154297-154294, c153638-153202) FUN_000014
71 genome:CDS hypothetical protein (sample:c154297-154294, c153638-153202) FUN_000014
72 genome:mRNA hypothetical protein (sample:167121-168360, 168722-169212) FUN_000015
73 genome:CDS hypothetical protein (sample:167121-168360, 168722-169212) FUN_000015
74 genome:CDS hypothetical protein (sample:c178787-178780, c177172-176887, c176824-176699) FUN_000016
75 genome:mRNA hypothetical protein (sample:c178787-178780, c177172-176887, c176824-176699) FUN_000016
76 genome:mRNA hypothetical protein (sample:c180759-180756, c180698-180028) FUN_000017
77 genome:CDS hypothetical protein (sample:c180759-180756, c180698-180028) FUN_000017
78 genome:CDS hypothetical protein (sample:c184433-184429, c184054-183921, c183856-183710, c183658-183489) FUN_000018
79 genome:mRNA hypothetical protein (sample:c184433-184429, c184054-183921, c183856-183710, c183658-183489) FUN_000018
80 genome:CDS hypothetical protein (sample:c186328-186324, c186254-186053) FUN_000019
81 genome:mRNA hypothetical protein (sample:c186328-186324, c186254-186053) FUN_000019
82 genome:CDS hypothetical protein (sample:194065-194461, 194518-194669) FUN_000020
83 genome:mRNA hypothetical protein (sample:194065-194461, 194518-194669) FUN_000020
84 genome:CDS hypothetical protein (sample:c215109-214958, c214878-214671, c213306-213085) FUN_000021
85 genome:mRNA hypothetical protein (sample:c215109-214958, c214878-214671, c213306-213085) FUN_000021
86 genome:CDS hypothetical protein (sample:386187-386191, 386272-387075, 387120-387144) FUN_000025
87 genome:mRNA hypothetical protein (sample:386187-386191, 386272-387075, 387120-387144) FUN_000025
88 genome:CDS hypothetical protein (sample:391297-391301, 391479-391489, 391758-392254, 392500-392851, 393283-393638) FUN_000026
89 genome:mRNA hypothetical protein (sample:391297-391301, 391479-391489, 391758-392254, 392500-392851, 393283-393638) FUN_000026
90 genome:CDS hypothetical protein (sample:c402790-402786, c402710-400817, c400781-400773) FUN_000027
91 genome:mRNA hypothetical protein (sample:c402790-402786, c402710-400817, c400781-400773) FUN_000027
92 genome:CDS hypothetical protein (sample:c411102-410699, c410403-410197, c409305-408840, c408474-407989, c407903-407694, c407225-406272, c406091-405530, c405518-405391) FUN_000028
93 genome:mRNA hypothetical protein (sample:c411102-410699, c410403-410197, c409305-408840, c408474-407989, c407903-407694, c407225-406272, c406091-405530, c405518-405391) FUN_000028
94 genome:CDS hypothetical protein (sample:c429748-429644, c429578-429470, c429273-429076, c428990-428479) FUN_000029
95 genome:mRNA hypothetical protein (sample:c429748-429644, c429578-429470, c429273-429076, c428990-428479) FUN_000029
96 genome:CDS hypothetical protein (sample:c445172-445169, c445114-444429) FUN_000030
97 genome:mRNA hypothetical protein (sample:c445172-445169, c445114-444429) FUN_000030
98 genome:CDS hypothetical protein (sample:446127-446275, 446336-446553, 446619-446752, 446956-447105, 447169-447711) FUN_000031
99 genome:mRNA hypothetical protein (sample:446127-446275, 446336-446553, 446619-446752, 446956-447105, 447169-447711) FUN_000031
100 genome:CDS hypothetical protein (sample:c454670-454666, c454610-454412) FUN_000034
101 genome:mRNA hypothetical protein (sample:c454670-454666, c454610-454412) FUN_000034
102 genome:CDS hypothetical protein (sample:c457592-457587, c457550-457413, c457045-456442, c456248-456040, c455256-454693) FUN_000035
103 genome:mRNA hypothetical protein (sample:c457592-457587, c457550-457413, c457045-456442, c456248-456040, c455256-454693) FUN_000035
104 genome:CDS hypothetical protein (sample:459816-460113, 460220-461690, 461752-462148, 462263-462454) FUN_000037
105 genome:mRNA hypothetical protein (sample:459816-460113, 460220-461690, 461752-462148, 462263-462454) FUN_000037
106 genome:CDS hypothetical protein (sample:c463679-463652, c463593-463293, c463086-462819) FUN_000038
107 genome:mRNA hypothetical protein (sample:c463679-463652, c463593-463293, c463086-462819) FUN_000038
108 genome:mRNA hypothetical protein (sample:c466984-466799, c466039-465912, c465617-464874, c464814-464633, c464576-464311) FUN_000039
109 genome:CDS hypothetical protein (sample:c466984-466799, c466039-465912, c465617-464874, c464814-464633, c464576-464311) FUN_000039
110 genome:CDS hypothetical protein (sample:c470961-470953, c470641-470150, c470077-469730) FUN_000040
111 genome:mRNA hypothetical protein (sample:c470961-470953, c470641-470150, c470077-469730) FUN_000040
112 genome:CDS hypothetical protein (sample:479876-480089, 480295-481339, 481394-481823) FUN_000041
113 genome:mRNA hypothetical protein (sample:479876-480089, 480295-481339, 481394-481823) FUN_000041
114 genome:CDS hypothetical protein (sample:c485565-485561, c485533-484891) FUN_000043
115 genome:mRNA hypothetical protein (sample:c485565-485561, c485533-484891) FUN_000043
116 genome:CDS hypothetical protein (sample:493013-493020, 493173-493452, 493541-493621, 493683-493826) FUN_000044
117 genome:mRNA hypothetical protein (sample:493013-493020, 493173-493452, 493541-493621, 493683-493826) FUN_000044
118 genome:CDS hypothetical protein (sample:c504016-504013, c503973-502325) FUN_000045
119 genome:mRNA hypothetical protein (sample:c504016-504013, c503973-502325) FUN_000045
120 genome:CDS hypothetical protein (sample:c521592-521588, c521275-520726, c520654-520482, c520181-520050, c519790-519639, c519580-519414) FUN_000046
121 genome:mRNA hypothetical protein (sample:c521592-521588, c521275-520726, c520654-520482, c520181-520050, c519790-519639, c519580-519414) FUN_000046
122 genome:CDS hypothetical protein (sample:c523738-523733, c523044-522567, c522383-522277, c522160-522056) FUN_000047
123 genome:mRNA hypothetical protein (sample:c523738-523733, c523044-522567, c522383-522277, c522160-522056) FUN_000047
124 genome:CDS hypothetical protein (sample:c525153-524964, c524909-524560) FUN_000048
125 genome:mRNA hypothetical protein (sample:c525153-524964, c524909-524560) FUN_000048
126 genome:CDS hypothetical protein (sample:c540618-540358, c539917-539336) FUN_000049
127 genome:mRNA hypothetical protein (sample:c540618-540358, c539917-539336) FUN_000049
128 genome:CDS hypothetical protein (sample:568959-568962, 569109-569293, 569311->569481) FUN_000051
129 genome:mRNA hypothetical protein (sample:568959-568962, 569109-569293, 569311->569481) FUN_000051
130 genome:CDS hypothetical protein (sample:582311-582319, 582423-582656, 582845-583000) FUN_000053
131 genome:mRNA hypothetical protein (sample:582311-582319, 582423-582656, 582845-583000) FUN_000053
132 genome:CDS hypothetical protein (sample:c584495-584344, c584276-583775, c583703-583551) FUN_000054
133 genome:mRNA hypothetical protein (sample:c584495-584344, c584276-583775, c583703-583551) FUN_000054
134 genome:CDS hypothetical protein (sample:c588129-586399, c585970-585768, c585707-585578) FUN_000055
135 genome:mRNA hypothetical protein (sample:c588129-586399, c585970-585768, c585707-585578) FUN_000055
136 genome:CDS hypothetical protein (sample:595803-595807, 596052-596670) FUN_000056
137 genome:mRNA hypothetical protein (sample:595803-595807, 596052-596670) FUN_000056
138 genome:CDS hypothetical protein (sample:598307-598335, 598398-598764) FUN_000057
139 genome:mRNA hypothetical protein (sample:598307-598335, 598398-598764) FUN_000057
140 genome:CDS hypothetical protein (sample:c600874-600870, c600730-600653, c600595-599095) FUN_000058
141 genome:mRNA hypothetical protein (sample:c600874-600870, c600730-600653, c600595-599095) FUN_000058
142 genome:CDS hypothetical protein (sample:603352-603370, 603434-604230) FUN_000059
143 genome:mRNA hypothetical protein (sample:603352-603370, 603434-604230) FUN_000059
144 genome:CDS hypothetical protein (sample:c611871-611867, c611601-611358, c611278-610049, c609998-609728, c609672-607742, c607241-607065, c606108-605908, c605852-605487, c605417-605316, c605240-605058) FUN_000060
145 genome:mRNA hypothetical protein (sample:c611871-611867, c611601-611358, c611278-610049, c609998-609728, c609672-607742, c607241-607065, c606108-605908, c605852-605487, c605417-605316, c605240-605058) FUN_000060
146 genome:CDS hypothetical protein (sample:c689310-689306, c689229-688494, c688430-687270, c687185-685812) FUN_000063
147 genome:mRNA hypothetical protein (sample:c689310-689306, c689229-688494, c688430-687270, c687185-685812) FUN_000063
148 genome:CDS hypothetical protein (sample:c692794-692573, c692447-692220, c692151-692128) FUN_000064
149 genome:mRNA hypothetical protein (sample:c692794-692573, c692447-692220, c692151-692128) FUN_000064
150 genome:CDS hypothetical protein (sample:694460-694467, 694516-694569, 694623-695049, 695109-695450, 695506-695859) FUN_000065
151 genome:mRNA hypothetical protein (sample:694460-694467, 694516-694569, 694623-695049, 695109-695450, 695506-695859) FUN_000065
152 genome:CDS hypothetical protein (sample:c696909-696904, c696856-695981) FUN_000066
153 genome:mRNA hypothetical protein (sample:c696909-696904, c696856-695981) FUN_000066
154 genome:CDS hypothetical protein (sample:697479-697750, 698245-699085) FUN_000067
155 genome:mRNA hypothetical protein (sample:697479-697750, 698245-699085) FUN_000067
156 genome:CDS hypothetical protein (sample:c700743-700586, c700523-700435, c700365-699296) FUN_000068
157 genome:mRNA hypothetical protein (sample:c700743-700586, c700523-700435, c700365-699296) FUN_000068
66 158
67 DiscRep_ALL:NO_ANNOTATION::2 bioseqs have no features 159 DiscRep_ALL:NO_ANNOTATION::2 bioseqs have no features
68 genome:sample2 (length 2030) 160 genome:sample2 (length 2030)
69 genome:sample3 (length 2100) 161 genome:sample3 (length 2100)
70 162
71 DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences. 163 DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences.
72 164
73 FATAL: DiscRep_ALL:DISC_BACTERIAL_PARTIAL_NONEXTENDABLE_PROBLEMS::1 featurepartial ends thands that do not abut the end of the sequence or a gap, and cannot be extended by 3 or fewer nucleotides to do so 165 FATAL: DiscRep_ALL:DISC_BACTERIAL_PARTIAL_NONEXTENDABLE_PROBLEMS::1 features have partial ends that do not abut the end of the sequence or a gap, and cannot be extended by 3 or fewer nucleotides to do so
74 genome:CDS hypothetical protein (sample4:2126-2199, 2258-3224, 3284->3537) FUN_000016 166 genome:CDS hypothetical protein (sample:568959-568962, 569109-569293, 569311->569481) FUN_000051
75 167
76 DiscRep_ALL:ONCALLER_COMMENT_PRESENT::4 comment descriptors were found (all same) 168 DiscRep_ALL:ONCALLER_COMMENT_PRESENT::4 comment descriptors were found (all same)
77 genome:sample:"Annotated using 1.8.7" 169 genome:sample:"Annotated using Funannotate 1.8.15"
78 genome:sample2:"Annotated using 1.8.7" 170 genome:sample2:"Annotated using Funannotate 1.8.15"
79 genome:sample3:"Annotated using 1.8.7" 171 genome:sample3:"Annotated using Funannotate 1.8.15"
80 genome:sample4:"Annotated using 1.8.7" 172 genome:sample4:"Annotated using Funannotate 1.8.15"
81 173
82 DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::4 bioseqs are missing GenomeAssembly structured comments 174 DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::4 bioseqs are missing GenomeAssembly structured comments
83 genome:sample (length 215740) 175 genome:sample (length 720580)
84 genome:sample2 (length 2030) 176 genome:sample2 (length 2030)
85 genome:sample3 (length 2100) 177 genome:sample3 (length 2100)
86 genome:sample4 (length 7560) 178 genome:sample4 (length 7560)
87 179
88 DiscRep_ALL:MOLTYPE_NOT_MRNA::4 molecule types are not set as mRNA. 180 DiscRep_ALL:MOLTYPE_NOT_MRNA::4 molecule types are not set as mRNA.
89 genome:sample (length 215740) 181 genome:sample (length 720580)
90 genome:sample2 (length 2030) 182 genome:sample2 (length 2030)
91 genome:sample3 (length 2100) 183 genome:sample3 (length 2100)
92 genome:sample4 (length 7560) 184 genome:sample4 (length 7560)
93 185
94 DiscRep_ALL:TECHNIQUE_NOT_TSA::4 technique are not set as TSA 186 DiscRep_ALL:TECHNIQUE_NOT_TSA::4 technique are not set as TSA
95 genome:sample (length 215740) 187 genome:sample (length 720580)
96 genome:sample2 (length 2030) 188 genome:sample2 (length 2030)
97 genome:sample3 (length 2100) 189 genome:sample3 (length 2100)
98 genome:sample4 (length 7560) 190 genome:sample4 (length 7560)
99 191
100 DiscRep_ALL:MISSING_STRUCTURED_COMMENT::4 sequences do not include structured comments. 192 DiscRep_ALL:MISSING_STRUCTURED_COMMENT::4 sequences do not include structured comments.
101 genome:sample (length 215740) 193 genome:sample (length 720580)
102 genome:sample2 (length 2030) 194 genome:sample2 (length 2030)
103 genome:sample3 (length 2100) 195 genome:sample3 (length 2100)
104 genome:sample4 (length 7560) 196 genome:sample4 (length 7560)
105 197
106 DiscRep_ALL:MISSING_PROJECT::20 sequences do not include project. 198 DiscRep_ALL:MISSING_PROJECT::73 sequences do not include project.
107 genome:sample (length 215740) 199 genome:sample (length 720580)
108 genome:ncbi:FUN_000001-T1 (length 124) 200 genome:ncbi:FUN_000001-T1 (length 458)
109 genome:ncbi:FUN_000002-T1 (length 82) 201 genome:ncbi:FUN_000002-T1 (length 375)
110 genome:ncbi:FUN_000003-T1 (length 367) 202 genome:ncbi:FUN_000003-T1 (length 957)
111 genome:ncbi:FUN_000004-T1 (length 831) 203 genome:ncbi:FUN_000004-T1 (length 2136)
112 genome:ncbi:FUN_000005-T1 (length 135) 204 genome:ncbi:FUN_000005-T1 (length 315)
113 genome:ncbi:FUN_000006-T1 (length 137) 205 genome:ncbi:FUN_000006-T1 (length 278)
114 genome:ncbi:FUN_000007-T1 (length 1002) 206 genome:ncbi:FUN_000007-T1 (length 365)
115 genome:ncbi:FUN_000008-T1 (length 278) 207 genome:ncbi:FUN_000008-T1 (length 171)
116 genome:ncbi:FUN_000009-T1 (length 578) 208 genome:ncbi:FUN_000009-T1 (length 132)
117 genome:ncbi:FUN_000010-T1 (length 90) 209 genome:ncbi:FUN_000010-T1 (length 338)
118 genome:ncbi:FUN_000011-T1 (length 554) 210 genome:ncbi:FUN_000011-T1 (length 294)
119 genome:ncbi:FUN_000012-T1 (length 479) 211 genome:ncbi:FUN_000012-T1 (length 341)
120 genome:ncbi:FUN_000013-T1 (length 61) 212 genome:ncbi:FUN_000013-T1 (length 589)
121 genome:ncbi:FUN_000014-T1 (length 484) 213 genome:ncbi:FUN_000014-T1 (length 146)
122 genome:sample2 (length 2030) 214 genome:ncbi:FUN_000015-T1 (length 576)
123 genome:sample3 (length 2100) 215 genome:ncbi:FUN_000016-T1 (length 139)
124 genome:sample4 (length 7560) 216 genome:ncbi:FUN_000017-T1 (length 224)
125 genome:ncbi:FUN_000015-T1 (length 124) 217 genome:ncbi:FUN_000018-T1 (length 151)
126 genome:ncbi:FUN_000016-T1 (length 432) 218 genome:ncbi:FUN_000019-T1 (length 68)
219 genome:ncbi:FUN_000020-T1 (length 182)
220 genome:ncbi:FUN_000021-T1 (length 193)
221 genome:ncbi:FUN_000022-T1 (length 550)
222 genome:ncbi:FUN_000023-T1 (length 515)
223 genome:ncbi:FUN_000024-T1 (length 96)
224 genome:ncbi:FUN_000025-T1 (length 277)
225 genome:ncbi:FUN_000026-T1 (length 406)
226 genome:ncbi:FUN_000027-T1 (length 635)
227 genome:ncbi:FUN_000028-T1 (length 1138)
228 genome:ncbi:FUN_000029-T1 (length 307)
229 genome:ncbi:FUN_000030-T1 (length 229)
230 genome:ncbi:FUN_000031-T1 (length 397)
231 genome:ncbi:FUN_000032-T1 (length 430)
232 genome:ncbi:FUN_000033-T1 (length 214)
233 genome:ncbi:FUN_000034-T1 (length 67)
234 genome:ncbi:FUN_000035-T1 (length 506)
235 genome:ncbi:FUN_000036-T1 (length 143)
236 genome:ncbi:FUN_000037-T1 (length 785)
237 genome:ncbi:FUN_000038-T1 (length 198)
238 genome:ncbi:FUN_000039-T1 (length 501)
239 genome:ncbi:FUN_000040-T1 (length 282)
240 genome:ncbi:FUN_000041-T1 (length 562)
241 genome:ncbi:FUN_000042-T1 (length 186)
242 genome:ncbi:FUN_000043-T1 (length 215)
243 genome:ncbi:FUN_000044-T1 (length 170)
244 genome:ncbi:FUN_000045-T1 (length 550)
245 genome:ncbi:FUN_000046-T1 (length 392)
246 genome:ncbi:FUN_000047-T1 (length 231)
247 genome:ncbi:FUN_000048-T1 (length 179)
248 genome:ncbi:FUN_000049-T1 (length 280)
249 genome:ncbi:FUN_000050-T1 (length 117)
250 genome:ncbi:FUN_000051-T1 (length 120)
251 genome:ncbi:FUN_000052-T1 (length 209)
252 genome:ncbi:FUN_000053-T1 (length 132)
253 genome:ncbi:FUN_000054-T1 (length 268)
254 genome:ncbi:FUN_000055-T1 (length 687)
255 genome:ncbi:FUN_000056-T1 (length 207)
256 genome:ncbi:FUN_000057-T1 (length 131)
257 genome:ncbi:FUN_000058-T1 (length 527)
258 genome:ncbi:FUN_000059-T1 (length 271)
259 genome:ncbi:FUN_000060-T1 (length 1569)
260 genome:ncbi:FUN_000062-T1 (length 477)
261 genome:ncbi:FUN_000063-T1 (length 1091)
262 genome:ncbi:FUN_000064-T1 (length 157)
263 genome:ncbi:FUN_000065-T1 (length 394)
264 genome:ncbi:FUN_000066-T1 (length 293)
265 genome:ncbi:FUN_000067-T1 (length 370)
266 genome:ncbi:FUN_000068-T1 (length 438)
267 genome:sample2 (length 2030)
268 genome:sample3 (length 2100)
269 genome:sample4 (length 7560)
270 genome:ncbi:FUN_000069-T1 (length 458)
271 genome:ncbi:FUN_000070-T1 (length 375)
127 272
128 DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same) 273 DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same)
129 DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing) 274 DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing)
130 DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::4 Molinfos are missing field technique 275 DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::4 Molinfos are missing field technique
131 genome:sample (length 215740) 276 genome:sample (length 720580)
132 genome:sample2 (length 2030) 277 genome:sample2 (length 2030)
133 genome:sample3 (length 2100) 278 genome:sample3 (length 2100)
134 genome:sample4 (length 7560) 279 genome:sample4 (length 7560)
135 280