comparison funannotate_predict.xml @ 6:7abc5f6dd595 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8307455ce2bb36981fee509f556ff17c227a9d8a

5:2bba2ff070d9

    ## Need to copy too as the test_data is read only on CI
    cp -r '${database.fields.path}' './hacked_database' &&
    sed -i.bak 's|/tmp/prout|'`pwd`'/hacked_database|' './hacked_database/trained_species/fly/info.json' &&
#end if

funannotate predict
--input '${input}'
--out output
#if $uglyTestingHack == "true":
    --database `pwd`'/hacked_database'
#else
    --database '$database.fields.path'

6:7abc5f6dd595

    ## Need to copy too as the test_data is read only on CI
    cp -r '${database.fields.path}' './hacked_database' &&
    sed -i.bak 's|/tmp/prout|'`pwd`'/hacked_database|' './hacked_database/trained_species/fly/info.json' &&
#end if

mkdir -p input/ &&
ln -s '${input}' input/input.fasta &&

funannotate predict
--input input/input.fasta
--out output
#if $uglyTestingHack == "true":
    --database `pwd`'/hacked_database'
#else
    --database '$database.fields.path'